Variant report
| Variant | rs967336 |
|---|---|
| Chromosome Location | chr3:21071487-21071488 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:21067350..21069805-chr3:21070647..21072179,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs12491034 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12636382 | 0.85[AMR][1000 genomes] |
| rs13065045 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13073440 | 0.80[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17007963 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1846075 | 0.81[AMR][1000 genomes] |
| rs1846076 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs2173234 | 0.86[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34075807 | 0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35663760 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6803390 | 0.93[ASN][1000 genomes] |
| rs71310234 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73036901 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7627738 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9310635 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876607 | chr3:20972475-21087219 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| 2 | nsv876608 | chr3:21008710-21203048 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv998068 | chr3:21050191-21212603 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2422219 | chr3:21064893-21220097 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:21070800-21071600 | Weak transcription | Fetal Intestine Small | intestine |
