Variant report

Variant	rs1847181
Chromosome Location	chr12:39031821-39031822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1021256	0.81[EUR][1000 genomes]
rs1021258	0.93[EUR][1000 genomes]
rs1038540	0.93[EUR][1000 genomes]
rs1038543	0.93[EUR][1000 genomes]
rs10747574	0.93[EUR][1000 genomes]
rs10875959	0.92[ASN][1000 genomes]
rs10875962	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10875963	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1095577	0.86[EUR][1000 genomes]
rs11168552	0.81[ASN][1000 genomes]
rs11168979	0.94[ASN][1000 genomes]
rs11169095	0.92[ASN][1000 genomes]
rs11169333	0.93[EUR][1000 genomes]
rs11169407	0.93[EUR][1000 genomes]
rs12306901	0.86[EUR][1000 genomes]
rs12309958	0.91[ASN][1000 genomes]
rs12318974	0.92[ASN][1000 genomes]
rs12322362	0.82[ASN][1000 genomes]
rs1472657	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1486349	0.93[EUR][1000 genomes]
rs1486350	0.93[EUR][1000 genomes]
rs1486351	0.86[EUR][1000 genomes]
rs1486352	0.83[EUR][1000 genomes]
rs1486353	0.93[EUR][1000 genomes]
rs1502631	0.81[ASN][1000 genomes]
rs1615569	0.93[EUR][1000 genomes]
rs1619885	0.93[EUR][1000 genomes]
rs1620594	0.93[EUR][1000 genomes]
rs1620655	0.93[EUR][1000 genomes]
rs1621467	0.93[EUR][1000 genomes]
rs1624751	0.93[EUR][1000 genomes]
rs1684419	0.93[EUR][1000 genomes]
rs1684420	0.93[EUR][1000 genomes]
rs1684421	0.93[EUR][1000 genomes]
rs1719846	0.93[EUR][1000 genomes]
rs1827459	0.85[ASN][1000 genomes]
rs1843640	0.89[EUR][1000 genomes]
rs1843641	0.93[EUR][1000 genomes]
rs1906043	0.93[EUR][1000 genomes]
rs2101370	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2264357	0.90[ASN][1000 genomes]
rs2388058	0.86[EUR][1000 genomes]
rs2630779	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2653739	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2653757	0.89[ASN][1000 genomes]
rs2653762	0.94[ASN][1000 genomes]
rs2653770	0.85[ASN][1000 genomes]
rs2653777	0.81[ASN][1000 genomes]
rs2730891	0.83[ASN][1000 genomes]
rs2730923	0.81[ASN][1000 genomes]
rs2730931	0.81[ASN][1000 genomes]
rs2730938	0.83[ASN][1000 genomes]
rs4238079	0.91[ASN][1000 genomes]
rs4494336	0.89[EUR][1000 genomes]
rs4767968	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7957523	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7976054	0.93[EUR][1000 genomes]
rs7980889	0.92[ASN][1000 genomes]
rs826864	0.81[EUR][1000 genomes]
rs923200	0.91[ASN][1000 genomes]
rs9645814	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9805091	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422488	chr12:38103874-39070734	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv469356	chr12:38242029-39187408	Weak transcription Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv558574	chr12:38242029-39187408	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1039538	chr12:38640895-39180750	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1039821	chr12:38959645-39121578	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1053316	chr12:38959645-39122853	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1043831	chr12:38979065-39117868	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv541479	chr12:38979065-39117868	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39030800-39035000	Weak transcription	Esophagus	oesophagus
2	chr12:39031800-39032600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links