The 2.0 version of rSNPBase

Variant report

Variant rs7980889
Chromosome Location chr12:39064630-39064631
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:39045400-39068000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr12:39046000-39085400 Weak transcription Aorta Aorta
3 chr12:39046800-39080400 Weak transcription Spleen Spleen
4 chr12:39051600-39080400 Weak transcription Lung lung
5 chr12:39051600-39080800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
6 chr12:39054600-39071000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr12:39055800-39100800 Weak transcription NHEK skin
8 chr12:39056000-39080200 Weak transcription Ovary ovary
9 chr12:39056000-39092200 Weak transcription Colon Smooth Muscle Colon
10 chr12:39056000-39114800 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr12:39056000-39168600 Weak transcription Hela-S3 cervix
12 chr12:39056200-39078400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr12:39056200-39078400 Weak transcription Adipose Nuclei Adipose
14 chr12:39056200-39079000 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr12:39056200-39080200 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr12:39056800-39083000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr12:39057400-39070200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr12:39057400-39083000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr12:39057600-39072200 Weak transcription NHDF-Ad bronchial
20 chr12:39057800-39069000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr12:39058000-39077600 Weak transcription HMEC breast
22 chr12:39058200-39079000 Weak transcription GM12878-XiMat blood
23 chr12:39060400-39066800 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr12:39060400-39067600 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr12:39061200-39080400 Weak transcription A549 lung
26 chr12:39061600-39080200 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr12:39062000-39065000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr12:39062000-39066200 Weak transcription Primary monocytes fromperipheralblood blood
29 chr12:39063200-39071800 Strong transcription Liver Liver
30 chr12:39063400-39065000 Strong transcription Monocytes-CD14+_RO01746 blood
31 chr12:39063400-39066600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr12:39063800-39065000 Weak transcription Fetal Brain Male brain
33 chr12:39063800-39069600 Weak transcription Left Ventricle heart
34 chr12:39063800-39080400 Weak transcription Fetal Intestine Large intestine
35 chr12:39063800-39082600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr12:39064000-39064800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr12:39064000-39066200 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr12:39064200-39065400 Weak transcription Primary hematopoietic stem cells blood
39 chr12:39064200-39067800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015