Variant report

Variant	rs1849004
Chromosome Location	chr19:22142455-22142456
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10404669	0.86[ASN][1000 genomes]
rs10405613	0.86[ASN][1000 genomes]
rs10405673	0.82[ASN][1000 genomes]
rs10406119	0.86[ASN][1000 genomes]
rs10406485	0.86[ASN][1000 genomes]
rs10406551	0.86[ASN][1000 genomes]
rs10406553	0.82[ASN][1000 genomes]
rs10406653	0.86[ASN][1000 genomes]
rs10407173	0.86[ASN][1000 genomes]
rs10407250	0.86[ASN][1000 genomes]
rs10408150	0.86[ASN][1000 genomes]
rs10411275	0.86[ASN][1000 genomes]
rs10411943	0.86[ASN][1000 genomes]
rs10412953	0.86[ASN][1000 genomes]
rs10413784	0.86[ASN][1000 genomes]
rs10414685	0.80[ASN][1000 genomes]
rs10415794	0.86[ASN][1000 genomes]
rs10415826	0.86[ASN][1000 genomes]
rs10415930	0.82[ASN][1000 genomes]
rs10417285	0.86[ASN][1000 genomes]
rs10417916	0.86[ASN][1000 genomes]
rs10418804	0.86[ASN][1000 genomes]
rs10419142	0.86[ASN][1000 genomes]
rs10419184	0.82[ASN][1000 genomes]
rs10420019	0.86[ASN][1000 genomes]
rs10420042	0.86[ASN][1000 genomes]
rs10422289	0.86[ASN][1000 genomes]
rs10423114	0.86[ASN][1000 genomes]
rs10423457	0.86[ASN][1000 genomes]
rs10423522	0.86[ASN][1000 genomes]
rs10423881	0.86[ASN][1000 genomes]
rs10425828	0.86[ASN][1000 genomes]
rs10426159	0.86[ASN][1000 genomes]
rs11878866	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12151358	0.86[ASN][1000 genomes]
rs16998834	0.86[ASN][1000 genomes]
rs17701834	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1968446	0.86[ASN][1000 genomes]
rs2043315	0.86[ASN][1000 genomes]
rs2043316	0.86[ASN][1000 genomes]
rs2043317	0.86[ASN][1000 genomes]
rs2163835	0.84[ASN][1000 genomes]
rs2163836	0.86[ASN][1000 genomes]
rs2163837	0.86[ASN][1000 genomes]
rs2214300	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2359811	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2359820	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2359833	0.86[ASN][1000 genomes]
rs2359835	0.82[ASN][1000 genomes]
rs28600030	0.86[ASN][1000 genomes]
rs28635943	0.86[ASN][1000 genomes]
rs28857211	0.86[ASN][1000 genomes]
rs28894669	0.86[ASN][1000 genomes]
rs4257328	0.86[ASN][1000 genomes]
rs4510150	0.86[ASN][1000 genomes]
rs4542784	0.86[ASN][1000 genomes]
rs62110863	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62110979	0.86[ASN][1000 genomes]
rs62110980	0.86[ASN][1000 genomes]
rs62110981	0.84[ASN][1000 genomes]
rs62110984	0.82[ASN][1000 genomes]
rs62110985	0.86[ASN][1000 genomes]
rs62110986	0.86[ASN][1000 genomes]
rs62110987	0.86[ASN][1000 genomes]
rs62110988	0.86[ASN][1000 genomes]
rs62110989	0.86[ASN][1000 genomes]
rs62110990	0.86[ASN][1000 genomes]
rs62110992	0.86[ASN][1000 genomes]
rs62110993	0.86[ASN][1000 genomes]
rs62111027	0.86[ASN][1000 genomes]
rs62111028	0.86[ASN][1000 genomes]
rs62111030	0.86[ASN][1000 genomes]
rs62111033	0.86[ASN][1000 genomes]
rs62111037	0.82[ASN][1000 genomes]
rs62111038	0.82[ASN][1000 genomes]
rs62112863	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62112864	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62112865	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62112871	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62112872	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62112917	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62112918	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62112919	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62112920	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62112921	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62112922	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62112955	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62112956	0.86[ASN][1000 genomes]
rs62112957	0.86[ASN][1000 genomes]
rs62112958	0.86[ASN][1000 genomes]
rs6511314	0.86[ASN][1000 genomes]
rs6511315	0.86[ASN][1000 genomes]
rs6511316	0.86[ASN][1000 genomes]
rs6511321	0.86[ASN][1000 genomes]
rs7246007	0.86[ASN][1000 genomes]
rs7247041	0.86[ASN][1000 genomes]
rs7247147	0.86[ASN][1000 genomes]
rs7247228	0.86[ASN][1000 genomes]
rs7248305	0.86[ASN][1000 genomes]
rs7250852	0.84[ASN][1000 genomes]
rs7250905	0.86[ASN][1000 genomes]
rs7251660	0.86[ASN][1000 genomes]
rs7251884	0.86[ASN][1000 genomes]
rs7252023	0.86[ASN][1000 genomes]
rs7252220	0.86[ASN][1000 genomes]
rs7252380	0.84[ASN][1000 genomes]
rs7252550	0.84[ASN][1000 genomes]
rs7252772	0.86[ASN][1000 genomes]
rs7253053	0.82[ASN][1000 genomes]
rs7254050	0.82[ASN][1000 genomes]
rs7259971	0.86[ASN][1000 genomes]
rs8100768	0.86[ASN][1000 genomes]
rs8103518	0.86[ASN][1000 genomes]
rs8104144	0.86[ASN][1000 genomes]
rs8104630	0.86[ASN][1000 genomes]
rs8108651	0.86[ASN][1000 genomes]
rs8108976	0.86[ASN][1000 genomes]
rs8110047	0.86[ASN][1000 genomes]
rs8110289	0.86[ASN][1000 genomes]
rs8110969	0.86[ASN][1000 genomes]
rs8110975	0.86[ASN][1000 genomes]
rs9653142	0.86[ASN][1000 genomes]
rs9653157	0.86[ASN][1000 genomes]
rs9973249	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3441368	chr19:21781459-22182822	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3339694	chr19:21781479-22182792	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1063115	chr19:21782104-22528039	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv911424	chr19:21798441-22471156	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv911425	chr19:21841379-22338142	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv3395280	chr19:21968753-22202288	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv833785	chr19:22082143-22263312	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1058678	chr19:22084265-22288686	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1059225	chr19:22084265-22301003	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv2754060	chr19:22086241-22567144	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv432039	chr19:22086260-22704860	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
12	esv3384540	chr19:22089182-22316805	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	esv3326382	chr19:22112592-22509135	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	esv3392637	chr19:22135121-22332040	ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22139200-22144800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr19:22139400-22142600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:22141200-22142600	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:22141400-22142800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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