Variant report

Variant	rs62112872
Chromosome Location	chr19:22192425-22192426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10401922	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10404669	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10405613	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10405673	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10406119	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10406485	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10406551	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10406553	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10406653	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10407173	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10407250	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10408150	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10411275	0.91[ASN][1000 genomes]
rs10411943	0.91[ASN][1000 genomes]
rs10412953	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10413784	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10414685	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10414861	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10415794	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10415826	0.91[ASN][1000 genomes]
rs10415930	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10417285	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10417916	0.91[ASN][1000 genomes]
rs10418804	0.91[ASN][1000 genomes]
rs10419142	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10419184	0.86[ASN][1000 genomes]
rs10420019	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10420042	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10422289	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10423114	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10423457	0.91[ASN][1000 genomes]
rs10423522	0.91[ASN][1000 genomes]
rs10423881	0.91[ASN][1000 genomes]
rs10425828	0.91[ASN][1000 genomes]
rs10426159	0.91[ASN][1000 genomes]
rs11878866	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12151358	0.91[ASN][1000 genomes]
rs16998834	0.91[ASN][1000 genomes]
rs17701834	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1849004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1968446	0.91[ASN][1000 genomes]
rs2043315	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2043316	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2043317	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2163835	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2163836	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2163837	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2214300	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2359811	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2359820	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2359833	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2359835	0.86[ASN][1000 genomes]
rs28600030	0.91[ASN][1000 genomes]
rs28635943	0.91[ASN][1000 genomes]
rs28822164	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28857211	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28894669	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4257328	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4510150	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4542784	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110863	0.89[ASN][1000 genomes]
rs62110979	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110980	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110981	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62110984	0.86[ASN][1000 genomes]
rs62110985	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110986	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110987	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110988	0.91[ASN][1000 genomes]
rs62110989	0.91[ASN][1000 genomes]
rs62110990	0.91[ASN][1000 genomes]
rs62110992	0.91[ASN][1000 genomes]
rs62110993	0.91[ASN][1000 genomes]
rs62111027	0.91[ASN][1000 genomes]
rs62111028	0.91[ASN][1000 genomes]
rs62111030	0.91[ASN][1000 genomes]
rs62111033	0.91[ASN][1000 genomes]
rs62111037	0.86[ASN][1000 genomes]
rs62111038	0.86[ASN][1000 genomes]
rs62112863	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112864	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112865	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62112917	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112918	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112919	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62112920	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62112921	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112922	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112955	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112956	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112957	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62112958	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6511314	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6511315	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6511316	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6511321	0.91[ASN][1000 genomes]
rs7246007	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7247041	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7247147	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7247228	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7248305	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7249591	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7250852	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7250905	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7251660	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7251884	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7252023	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7252220	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7252380	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7252550	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7252772	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7253053	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7254050	0.86[ASN][1000 genomes]
rs7259971	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8100768	0.91[ASN][1000 genomes]
rs8103518	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8104144	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8104630	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8108651	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8108976	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8110047	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8110289	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8110841	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8110969	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8110975	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9653142	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9653157	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs988211	0.82[ASN][1000 genomes]
rs9973249	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063115	chr19:21782104-22528039	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv911424	chr19:21798441-22471156	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv911425	chr19:21841379-22338142	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3395280	chr19:21968753-22202288	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv833785	chr19:22082143-22263312	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1058678	chr19:22084265-22288686	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1059225	chr19:22084265-22301003	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv2754060	chr19:22086241-22567144	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv432039	chr19:22086260-22704860	ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
10	esv3384540	chr19:22089182-22316805	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv3326382	chr19:22112592-22509135	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	esv3392637	chr19:22135121-22332040	ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv961196	chr19:22142802-22258858	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv3514246	chr19:22145480-22348690	ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	esv3514247	chr19:22145480-22348690	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	esv3495704	chr19:22149379-22352547	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	esv3495705	chr19:22149379-22352547	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv469674	chr19:22154515-22344992	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv436253	chr19:22188479-22385212	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22183000-22192600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr19:22188200-22192600	Weak transcription	Aorta	Aorta
3	chr19:22191000-22192600	Weak transcription	Right Ventricle	heart
4	chr19:22191400-22194000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr19:22191600-22194000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr19:22192200-22193800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:22192200-22193800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:22192200-22194000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr19:22192400-22193800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:22192400-22194000	ZNF genes & repeats	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links