Variant report

Variant	rs1849107
Chromosome Location	chr3:138807648-138807649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10935298	0.81[ASN][1000 genomes]
rs12493424	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12632179	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12636735	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1533134	0.90[ASN][1000 genomes]
rs2202665	0.96[ASN][1000 genomes]
rs57741262	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs581530	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs584059	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs586043	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59158249	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59753488	0.95[EUR][1000 genomes]
rs59774400	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs599415	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60709982	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60944880	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61151687	0.90[ASN][1000 genomes]
rs61484319	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs633876	0.95[EUR][1000 genomes]
rs676102	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6804898	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68129305	0.96[ASN][1000 genomes]
rs72630200	0.91[ASN][1000 genomes]
rs72978912	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7636403	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002612	chr3:138213274-138831792	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv536726	chr3:138213274-138831792	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv965215	chr3:138800265-138808614	Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138807600-138808000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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