Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:138830004..138832870-chr3:139047929..139048811,16	MCF-7	breast:
2	chr3:138830340..138831523-chr3:139047812..139048878,10	K562	blood:
3	chr3:138830352..138831184-chr3:139072519..139073327,2	MCF-7	breast:
4	chr3:138829485..138831006-chr3:139046744..139049335,2	K562	blood:
5	chr3:138830341..138831717-chr3:139047849..139048818,6	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1081429	0.85[ASN][1000 genomes]
rs1092455	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10935296	0.84[CHB][hapmap]
rs10935298	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10935299	0.87[JPT][hapmap]
rs12637621	0.92[EUR][1000 genomes]
rs1849107	0.90[ASN][1000 genomes]
rs2202665	0.95[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs581530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs584059	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs586043	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs599415	0.98[ASN][1000 genomes]
rs61151687	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs629414	0.89[CHB][hapmap]
rs633876	0.82[CHB][hapmap]
rs647078	0.88[ASN][1000 genomes]
rs647093	0.88[ASN][1000 genomes]
rs649829	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs663729	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs676102	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs68129305	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72630200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72978915	0.92[EUR][1000 genomes]
rs770978	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002612	chr3:138213274-138831792	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv536726	chr3:138213274-138831792	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138820600-138839000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:138826400-138830800	Weak transcription	Pancreas	Pancrea
3	chr3:138827400-138831200	Enhancers	Liver	Liver
4	chr3:138828400-138830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:138829600-138830800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:138829800-138830800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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