Variant report

Variant	rs649829
Chromosome Location	chr3:138836902-138836903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:138836042..138841722-chr3:138842580..138845228,5	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10513056	1.00[CEU][hapmap]
rs1081429	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1092455	0.96[ASN][1000 genomes]
rs10935298	0.96[ASN][1000 genomes]
rs10935299	0.87[JPT][hapmap]
rs12493424	1.00[CEU][hapmap]
rs12632179	1.00[CEU][hapmap]
rs1533134	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17559081	1.00[CEU][hapmap]
rs2202665	0.90[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs581530	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs584059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs586043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs599157	1.00[CEU][hapmap]
rs599415	0.89[ASN][1000 genomes]
rs61151687	0.86[ASN][1000 genomes]
rs629414	0.84[CHB][hapmap]
rs633876	1.00[CEU][hapmap]
rs647078	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647093	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs663729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676102	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72630200	0.87[ASN][1000 genomes]
rs72630201	0.84[ASN][1000 genomes]
rs770978	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs770979	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs770980	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs940190	0.80[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868955	chr3:138248190-138848947	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv829736	chr3:138737352-138934758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:138820600-138839000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:138831200-138837600	Weak transcription	Ovary	ovary
3	chr3:138831200-138838600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:138833200-138838600	Weak transcription	K562	blood
5	chr3:138835400-138837000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:138835600-138837000	Enhancers	Osteobl	bone
7	chr3:138835600-138837200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:138835600-138839000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:138835800-138843200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:138836200-138837200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr3:138836200-138843400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:138836400-138837000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr3:138836400-138841600	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr3:138836600-138838600	Weak transcription	NHDF-Ad	bronchial
15	chr3:138836600-138838800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:138836600-138838800	Weak transcription	NH-A	brain
17	chr3:138836600-138839000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:138836600-138839200	Weak transcription	HMEC	breast
19	chr3:138836600-138839400	Weak transcription	Colonic Mucosa	Colon
20	chr3:138836600-138843400	Enhancers	HSMM	muscle
21	chr3:138836600-138846800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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