Variant report

Variant	rs1849600
Chromosome Location	chr2:20269244-20269245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20268380..20271374-chr2:20576831..20579270,2	MCF-7	breast:
2	chr2:20214554..20219540-chr2:20268505..20271599,4	MCF-7	breast:
3	chr2:20269147..20275842-chr2:20291951..20298996,12	MCF-7	breast:
4	chr2:20268478..20271036-chr2:20289525..20291447,2	MCF-7	breast:
5	chr2:20249788..20257046-chr2:20268868..20274735,23	MCF-7	breast:
6	chr2:20258295..20259895-chr2:20267044..20269730,2	K562	blood:
7	chr2:20268337..20271291-chr2:20423747..20426134,3	MCF-7	breast:
8	chr2:20269058..20271837-chr2:20423527..20425315,3	MCF-7	breast:
9	chr2:20260254..20262852-chr2:20267314..20269443,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000068697	Chromatin interaction
ENSG00000223734	Chromatin interaction
ENSG00000115884	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12233028	0.90[EUR][1000 genomes]
rs1513832	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4666352	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4666353	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4666354	0.90[EUR][1000 genomes]
rs55920955	0.88[EUR][1000 genomes]
rs57887920	0.90[EUR][1000 genomes]
rs57965673	0.83[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20266400-20270000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:20266600-20270600	Weak transcription	Fetal Heart	heart
3	chr2:20266600-20270800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:20266600-20271000	Weak transcription	Brain Substantia Nigra	brain
5	chr2:20266600-20271200	Weak transcription	Brain Angular Gyrus	brain
6	chr2:20266600-20271200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:20266600-20271200	Weak transcription	Esophagus	oesophagus
8	chr2:20266600-20271200	Weak transcription	Gastric	stomach
9	chr2:20266600-20271200	Weak transcription	Left Ventricle	heart
10	chr2:20266600-20271200	Weak transcription	Right Atrium	heart
11	chr2:20266600-20271200	Weak transcription	Right Ventricle	heart
12	chr2:20266600-20271200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:20266600-20271200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:20266600-20271200	Weak transcription	Stomach Mucosa	stomach
15	chr2:20266600-20272400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr2:20266600-20273000	Weak transcription	Psoas Muscle	Psoas
17	chr2:20267200-20275000	Enhancers	Placenta	Placenta
18	chr2:20267400-20271200	Weak transcription	Colonic Mucosa	Colon
19	chr2:20267600-20271000	Weak transcription	HepG2	liver
20	chr2:20268400-20270600	Weak transcription	A549	lung
21	chr2:20268400-20270800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr2:20268400-20271200	Weak transcription	Fetal Intestine Small	intestine
23	chr2:20268600-20269800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:20268600-20269800	Weak transcription	NHDF-Ad	bronchial
25	chr2:20268600-20269800	Weak transcription	NHEK	skin
26	chr2:20268600-20270000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:20268600-20270000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr2:20268600-20270000	Weak transcription	Adipose Nuclei	Adipose
29	chr2:20268600-20270000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr2:20268600-20270000	Weak transcription	Hela-S3	cervix
31	chr2:20268600-20270000	Weak transcription	HMEC	breast
32	chr2:20268600-20270200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:20268600-20270200	Weak transcription	Ovary	ovary
34	chr2:20268600-20270200	Weak transcription	NHLF	lung
35	chr2:20268600-20270400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:20268600-20270400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr2:20268600-20270400	Weak transcription	Osteobl	bone
38	chr2:20268600-20270600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:20268600-20270800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:20268600-20270800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:20268600-20271000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:20268600-20271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr2:20268600-20271000	Weak transcription	Colon Smooth Muscle	Colon
44	chr2:20268600-20271000	Weak transcription	Fetal Lung	lung
45	chr2:20268600-20271000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr2:20268600-20271000	Weak transcription	NH-A	brain
47	chr2:20268600-20271200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr2:20268600-20271200	Weak transcription	HSMM	muscle
49	chr2:20268600-20271200	Weak transcription	HSMMtube	muscle
50	chr2:20268600-20271400	Weak transcription	Fetal Kidney	kidney

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