Variant report

Variant	rs57965673
Chromosome Location	chr2:20263089-20263090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:20262539..20265067-chr2:20270708..20273020,3	K562	blood:
2	chr2:20214721..20216712-chr2:20262631..20264995,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12052278	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12233028	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1849600	0.83[EUR][1000 genomes]
rs2010930	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3754907	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3754908	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3769763	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4666352	0.83[EUR][1000 genomes]
rs4666353	0.83[EUR][1000 genomes]
rs4666354	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55920955	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57887920	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60557282	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62112184	0.83[ASN][1000 genomes]
rs768377	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20252400-20266000	Weak transcription	Pancreas	Pancrea
2	chr2:20253200-20264400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:20260600-20264200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:20260600-20266600	Enhancers	Fetal Muscle Leg	muscle
5	chr2:20261400-20263200	Enhancers	Fetal Stomach	stomach
6	chr2:20261400-20263400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:20261400-20265600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:20261600-20263200	Enhancers	Stomach Smooth Muscle	stomach
9	chr2:20261600-20263400	Enhancers	HSMM	muscle
10	chr2:20261800-20263400	Enhancers	Rectal Smooth Muscle	rectum
11	chr2:20261800-20266800	Enhancers	Placenta	Placenta
12	chr2:20262000-20265600	Enhancers	HepG2	liver
13	chr2:20262200-20265600	Weak transcription	Colonic Mucosa	Colon
14	chr2:20262200-20265800	Weak transcription	Right Ventricle	heart
15	chr2:20262400-20263400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:20262400-20263400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:20262400-20263400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:20262400-20264000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:20262600-20263400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:20262600-20263400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:20262600-20263400	Enhancers	Osteobl	bone
22	chr2:20262600-20263800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:20262600-20265600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr2:20262800-20263200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr2:20262800-20263400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:20262800-20264000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:20262800-20264800	Weak transcription	HSMMtube	muscle
28	chr2:20262800-20265600	Weak transcription	Adipose Nuclei	Adipose
29	chr2:20262800-20265600	Weak transcription	Colon Smooth Muscle	Colon
30	chr2:20262800-20265600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr2:20262800-20265600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr2:20262800-20267600	Weak transcription	Fetal Kidney	kidney
33	chr2:20262800-20267600	Weak transcription	Fetal Lung	lung

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