Variant report

Variant	rs12052278
Chromosome Location	chr2:20244437-20244438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:20228828..20231384-chr2:20242994..20245611,2	K562	blood:
2	chr2:20243842..20246309-chr2:20264412..20267359,3	MCF-7	breast:
3	chr2:20243160..20246109-chr2:20246463..20248277,2	K562	blood:
4	chr2:20243120..20244878-chr2:20275333..20276849,2	MCF-7	breast:
5	chr2:20235025..20246171-chr2:20248104..20254249,17	MCF-7	breast:
6	chr2:20235625..20237177-chr2:20241948..20244789,2	MCF-7	breast:
7	chr2:20208585..20211284-chr2:20244401..20247153,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223734	Chromatin interaction
ENSG00000068697	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1016317	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1028051	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12233028	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12478941	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16987297	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2010930	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34309262	0.85[AMR][1000 genomes]
rs3754907	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3754908	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3769763	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666354	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55920955	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57887920	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57965673	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60557282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62109428	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs768377	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936509	0.82[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20221400-20249800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20230600-20248000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:20234800-20248200	Weak transcription	Psoas Muscle	Psoas
4	chr2:20235000-20248000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:20235400-20247400	Weak transcription	Fetal Brain Male	brain
6	chr2:20236600-20245000	Strong transcription	Primary B cells from cord blood	blood
7	chr2:20236600-20248000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:20236800-20246600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:20237800-20249000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr2:20238000-20248200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:20238600-20248800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:20238800-20247800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr2:20240400-20245400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr2:20240600-20247800	Weak transcription	HSMMtube	muscle
15	chr2:20240600-20247800	Weak transcription	NHLF	lung
16	chr2:20240600-20248000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr2:20240600-20248200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:20240600-20248200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:20240600-20248200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:20240600-20248200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr2:20240600-20248200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:20240600-20249200	Weak transcription	Colonic Mucosa	Colon
23	chr2:20240600-20249800	Weak transcription	Gastric	stomach
24	chr2:20240800-20244800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr2:20240800-20245600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr2:20240800-20246800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr2:20240800-20247600	Weak transcription	HMEC	breast
28	chr2:20240800-20248000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr2:20240800-20248000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr2:20240800-20248000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr2:20240800-20248000	Weak transcription	Fetal Kidney	kidney
32	chr2:20240800-20248200	Weak transcription	Brain Germinal Matrix	brain
33	chr2:20240800-20248400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr2:20240800-20248400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr2:20240800-20248400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr2:20240800-20248400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr2:20240800-20249000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr2:20240800-20249400	Weak transcription	Placenta	Placenta
39	chr2:20241000-20247800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:20241000-20249000	Weak transcription	Fetal Thymus	thymus
41	chr2:20241200-20247200	Enhancers	Ovary	ovary
42	chr2:20241200-20247600	Weak transcription	HSMM	muscle
43	chr2:20241400-20245200	Enhancers	Left Ventricle	heart
44	chr2:20241400-20246000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:20241400-20247600	Weak transcription	GM12878-XiMat	blood
46	chr2:20241400-20247600	Weak transcription	NHEK	skin
47	chr2:20241400-20248000	Weak transcription	A549	lung
48	chr2:20241400-20248200	Weak transcription	Dnd41	blood
49	chr2:20241400-20248600	Weak transcription	Thymus	Thymus
50	chr2:20241400-20249600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links