Variant report

Variant	rs62109428
Chromosome Location	chr2:20216978-20216979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1016317	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1028051	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12052278	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12475660	0.86[AMR][1000 genomes]
rs12478941	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16987297	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2010930	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34309262	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3754907	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3754908	0.82[EUR][1000 genomes]
rs3769763	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60557282	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs768377	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs936509	0.82[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62109428	TTC32	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20213000-20218400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:20213000-20220600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:20213000-20227200	Weak transcription	Ovary	ovary
4	chr2:20213200-20217000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:20213200-20218400	Weak transcription	Fetal Heart	heart
6	chr2:20213200-20225000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:20213200-20227000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:20213200-20227000	Weak transcription	Aorta	Aorta
9	chr2:20213400-20227400	Weak transcription	Fetal Kidney	kidney
10	chr2:20213400-20232200	Weak transcription	Right Ventricle	heart
11	chr2:20213600-20227000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:20214800-20220200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:20216400-20227800	Weak transcription	Fetal Intestine Large	intestine
14	chr2:20216400-20228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr2:20216600-20220400	Weak transcription	HepG2	liver
16	chr2:20216800-20224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links