The 2.0 version of rSNPBase

Variant report

Variant rs1850509
Chromosome Location chr1:85077660-85077661
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:32 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85070400-85079600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr1:85070400-85085200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:85071600-85085000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:85071800-85079800 Weak transcription Pancreas Pancrea
5 chr1:85071800-85084800 Weak transcription Brain Hippocampus Middle brain
6 chr1:85076400-85079000 Enhancers Primary T helper naive cells fromperipheralblood blood
7 chr1:85076600-85079200 Enhancers Primary T killer naive cells fromperipheralblood blood
8 chr1:85076800-85078000 Enhancers Colon Smooth Muscle Colon
9 chr1:85076800-85078000 Enhancers NHLF lung
10 chr1:85077000-85077800 Enhancers HUES48 Cell Line embryonic stem cell
11 chr1:85077000-85078000 Enhancers Brain Inferior Temporal Lobe brain
12 chr1:85077200-85077800 Enhancers Brain Substantia Nigra brain
13 chr1:85077200-85077800 Enhancers Stomach Smooth Muscle stomach
14 chr1:85077200-85077800 Enhancers NHDF-Ad bronchial
15 chr1:85077200-85078000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:85077200-85078600 Enhancers Fetal Thymus thymus
17 chr1:85077200-85078800 Enhancers Primary T helper cells PMA-I stimulated --
18 chr1:85077200-85079000 Enhancers Osteobl bone
19 chr1:85077200-85085400 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr1:85077400-85077800 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
21 chr1:85077400-85077800 Flanking Active TSS IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:85077400-85077800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr1:85077400-85077800 Enhancers Cortex derived primary cultured neurospheres brain
24 chr1:85077400-85077800 Enhancers Rectal Smooth Muscle rectum
25 chr1:85077400-85077800 ZNF genes & repeats GM12878-XiMat blood
26 chr1:85077400-85078200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr1:85077400-85078200 Weak transcription Primary T helper cells fromperipheralblood blood
28 chr1:85077400-85078600 Weak transcription Pancreatic Islets Pancreatic Islet
29 chr1:85077600-85077800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:85077600-85078400 Enhancers Brain Cingulate Gyrus brain
31 chr1:85077600-85079000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr1:85077600-85080000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015