Variant report

Variant	rs2911604
Chromosome Location	chr1:85072604-85072605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1417295	0.96[ASN][1000 genomes]
rs1850508	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1850509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2007454	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2911590	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2911595	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs2911603	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2911605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2911607	0.96[ASN][1000 genomes]
rs2911609	0.96[ASN][1000 genomes]
rs2943663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2943669	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2943670	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2943675	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2943676	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2943677	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2943678	0.86[EUR][1000 genomes]
rs2945138	0.86[JPT][hapmap]
rs2945140	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2945142	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2945146	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2945148	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2945149	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2945150	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2945152	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2945155	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs2945158	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2945160	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2994435	0.96[ASN][1000 genomes]
rs2994934	0.96[ASN][1000 genomes]
rs2994935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2994940	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2994943	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2994944	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2994946	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2994947	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs880412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3364770	chr1:85069339-85078334	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85069600-85077400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:85070200-85077400	Weak transcription	Fetal Heart	heart
3	chr1:85070400-85079600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:85070400-85085200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:85071200-85077200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:85071600-85077600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:85071600-85085000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:85071800-85072800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:85071800-85079800	Weak transcription	Pancreas	Pancrea
10	chr1:85071800-85084800	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:85072000-85077200	Weak transcription	Brain Substantia Nigra	brain
12	chr1:85072600-85073000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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