Variant report

Variant	rs1851546
Chromosome Location	chr2:73591127-73591128
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:73590790..73592935-chr2:73594185..73596507,2	K562	blood:
2	chr2:73587402..73589462-chr2:73589897..73591429,2	MCF-7	breast:
3	chr2:73494249..73497125-chr2:73589624..73592611,2	MCF-7	breast:
4	chr2:73590985..73593218-chr2:73601136..73602952,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10165862	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10175529	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10206188	0.83[ASN][1000 genomes]
rs11126395	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11126396	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11126399	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11693531	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11898362	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12465867	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1403412	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1522926	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1852644	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2091022	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901437	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35885918	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6546824	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6546826	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6546827	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6546829	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6706235	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6706409	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6710659	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6716776	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6728128	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747145	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6748040	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7560272	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7567017	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7567343	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7573275	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7576824	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7604588	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1851546	ALMS1P	cis	Thyroid	GTEx
rs1851546	TPRKB	Cis_1M	lymphoblastoid	RTeQTL
rs1851546	ALMS1	Cis_1M	lymphoblastoid	RTeQTL
rs1851546	ALMS1P	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73591000-73591600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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