Variant report

Variant	rs1522926
Chromosome Location	chr2:73591241-73591242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:73590790..73592935-chr2:73594185..73596507,2	K562	blood:
2	chr2:73587402..73589462-chr2:73589897..73591429,2	MCF-7	breast:
3	chr2:73494249..73497125-chr2:73589624..73592611,2	MCF-7	breast:
4	chr2:73590985..73593218-chr2:73601136..73602952,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10165862	0.91[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10175529	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10184268	0.80[AMR][1000 genomes]
rs10193972	0.80[YRI][hapmap]
rs10206188	0.87[ASN][1000 genomes]
rs10865398	0.92[CHB][hapmap]
rs11126395	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11126396	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11126399	0.91[CEU][hapmap];0.92[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11689392	0.82[AMR][1000 genomes]
rs11693531	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11898362	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11901272	1.00[YRI][hapmap]
rs12465867	0.90[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1403412	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1406105	0.83[CHB][hapmap]
rs1534471	0.80[YRI][hapmap]
rs1851546	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1852644	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1852647	0.92[CHB][hapmap]
rs1881246	0.92[CHB][hapmap]
rs1881247	0.92[CHB][hapmap]
rs2017116	0.92[CHB][hapmap]
rs2037814	0.92[CHB][hapmap]
rs2091022	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2421489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2421545	0.92[CHB][hapmap]
rs2421546	0.83[CEU][hapmap];0.92[CHB][hapmap]
rs2421550	0.80[YRI][hapmap]
rs2901437	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35885918	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3820700	0.92[CHB][hapmap]
rs6546824	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6546826	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6546827	0.89[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.80[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546829	0.91[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6546832	0.92[CHB][hapmap]
rs6546837	1.00[YRI][hapmap]
rs6546839	1.00[YRI][hapmap]
rs6706235	0.91[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6706409	0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6710659	0.91[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6716776	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6724782	1.00[YRI][hapmap]
rs6728128	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6747145	0.90[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6748040	0.90[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6749680	0.83[CHB][hapmap]
rs6756987	1.00[YRI][hapmap]
rs7560272	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7567017	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7567343	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7573275	0.84[ASN][1000 genomes]
rs7574291	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs7576824	0.90[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7598901	0.83[CHB][hapmap]
rs7604588	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs780390	0.92[CHB][hapmap]
rs780396	0.92[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1522926	TPRKB	Cis_1M	lymphoblastoid	RTeQTL
rs1522926	ALMS1	Cis_1M	lymphoblastoid	RTeQTL
rs1522926	ALMS1P	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73591000-73591600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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