Variant report

Variant	rs1881247
Chromosome Location	chr2:73650695-73650696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73612000..73614251-chr2:73648540..73650786,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116127	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10165862	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10190002	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10192125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10197233	0.84[EUR][1000 genomes]
rs10519309	0.90[ASN][1000 genomes]
rs1052161	0.85[JPT][hapmap]
rs1083920	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1083922	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10865398	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1091568	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11126399	1.00[CHB][hapmap]
rs11126407	0.85[EUR][1000 genomes]
rs11126408	0.84[EUR][1000 genomes]
rs11126409	0.83[EUR][1000 genomes]
rs11680056	0.84[EUR][1000 genomes]
rs11683970	0.86[EUR][1000 genomes]
rs11685372	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11689767	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12151671	0.85[EUR][1000 genomes]
rs1246096	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1246105	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12465867	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12620569	0.85[EUR][1000 genomes]
rs12713783	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12995433	0.96[ASN][1000 genomes]
rs12996463	0.87[ASN][1000 genomes]
rs13007306	0.84[EUR][1000 genomes]
rs13007623	0.85[EUR][1000 genomes]
rs1320374	0.85[JPT][hapmap]
rs1403412	1.00[CHB][hapmap]
rs1406105	0.90[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17349804	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1852645	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1852646	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1852647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1879666	0.85[EUR][1000 genomes]
rs1881246	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs1881248	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2017116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2037814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2091503	0.82[ASN][1000 genomes]
rs2091504	0.84[ASN][1000 genomes]
rs2178154	0.92[ASN][1000 genomes]
rs2421489	0.92[CHB][hapmap]
rs2421545	1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2421546	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2421548	0.96[ASN][1000 genomes]
rs2421589	0.81[EUR][1000 genomes]
rs2421590	0.85[EUR][1000 genomes]
rs2421660	0.85[EUR][1000 genomes]
rs2421662	0.85[EUR][1000 genomes]
rs2461691	0.85[EUR][1000 genomes]
rs28708576	0.82[EUR][1000 genomes]
rs2948441	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs2950770	0.95[EUR][1000 genomes]
rs34719281	0.85[EUR][1000 genomes]
rs3820700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3980696	0.83[EUR][1000 genomes]
rs4241256	0.86[EUR][1000 genomes]
rs4436991	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4852305	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4852309	0.83[EUR][1000 genomes]
rs4852310	0.85[EUR][1000 genomes]
rs4852927	0.96[ASN][1000 genomes]
rs4852936	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4852937	0.91[EUR][1000 genomes]
rs4852940	0.84[EUR][1000 genomes]
rs4852948	0.84[EUR][1000 genomes]
rs4852949	0.85[EUR][1000 genomes]
rs55677218	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56054150	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56068325	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56770679	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6546826	1.00[CHB][hapmap]
rs6546827	1.00[CHB][hapmap]
rs6546829	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6546830	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6546831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6546833	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6546834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546842	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6546863	0.85[EUR][1000 genomes]
rs66931335	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6706235	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6706409	1.00[CHB][hapmap]
rs6710659	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6729347	0.85[EUR][1000 genomes]
rs6730785	0.93[ASN][1000 genomes]
rs6732440	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6734450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745560	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs6746458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6746971	0.90[ASN][1000 genomes]
rs6747145	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6748040	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6749680	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs6759464	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67877078	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67898050	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68154245	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72811907	0.94[ASN][1000 genomes]
rs72811939	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7570014	0.93[EUR][1000 genomes]
rs7574291	1.00[CHB][hapmap]
rs7576824	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7598901	0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7608308	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7609034	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs780388	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780389	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs780391	0.81[ASN][1000 genomes]
rs780393	0.82[ASN][1000 genomes]
rs780396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs802113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73622800-73662800	Weak transcription	Right Ventricle	heart
2	chr2:73626600-73653200	Weak transcription	Left Ventricle	heart
3	chr2:73626800-73651600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:73626800-73651800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:73626800-73662600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:73626800-73662800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:73626800-73662800	Weak transcription	Aorta	Aorta
8	chr2:73626800-73663400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:73626800-73664000	Weak transcription	Thymus	Thymus
10	chr2:73627400-73652000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr2:73627400-73664400	Weak transcription	Pancreas	Pancrea
12	chr2:73628800-73663000	Weak transcription	Hela-S3	cervix
13	chr2:73630600-73651600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:73631400-73652600	Weak transcription	Fetal Intestine Small	intestine
15	chr2:73631400-73659800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr2:73632000-73651800	Weak transcription	HepG2	liver
17	chr2:73632400-73651800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:73632400-73658800	Weak transcription	Liver	Liver
19	chr2:73633200-73650800	Weak transcription	Fetal Thymus	thymus
20	chr2:73633200-73662800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:73633800-73651000	Weak transcription	Fetal Muscle Leg	muscle
22	chr2:73634000-73659200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:73634000-73661400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:73634000-73663200	Weak transcription	Psoas Muscle	Psoas
25	chr2:73634200-73652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:73634400-73662000	Weak transcription	Lung	lung
27	chr2:73634400-73662800	Weak transcription	Esophagus	oesophagus
28	chr2:73634600-73661800	Weak transcription	Brain Germinal Matrix	brain
29	chr2:73634800-73652600	Weak transcription	Fetal Intestine Large	intestine
30	chr2:73634800-73659600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr2:73635600-73659600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr2:73637200-73655800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr2:73637200-73659600	Weak transcription	GM12878-XiMat	blood
34	chr2:73637600-73662800	Weak transcription	Fetal Stomach	stomach
35	chr2:73637800-73662400	Weak transcription	A549	lung
36	chr2:73637800-73663600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr2:73637800-73676200	Weak transcription	Fetal Brain Male	brain
38	chr2:73638600-73661400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:73639200-73675400	Weak transcription	HMEC	breast
40	chr2:73642200-73666000	Weak transcription	NHLF	lung
41	chr2:73643000-73651000	Weak transcription	Ovary	ovary
42	chr2:73643400-73663000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr2:73644600-73662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr2:73645000-73651600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr2:73645400-73651800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr2:73645400-73662600	Weak transcription	Brain Substantia Nigra	brain
47	chr2:73645400-73675200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr2:73645600-73653800	Weak transcription	NHEK	skin
49	chr2:73645600-73655200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr2:73645600-73661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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