Variant report

Variant	rs6734450
Chromosome Location	chr2:73643182-73643183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73638989..73640908-chr2:73641819..73644176,2	MCF-7	breast:

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10165862	1.00[CHB][hapmap]
rs10190002	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10192125	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10193972	0.80[YRI][hapmap]
rs10197233	0.85[EUR][1000 genomes]
rs10519309	0.90[ASN][1000 genomes]
rs1052161	0.87[JPT][hapmap]
rs1083920	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1083922	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs10865398	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1091568	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11126399	1.00[CHB][hapmap]
rs11680056	0.85[EUR][1000 genomes]
rs11683970	0.86[EUR][1000 genomes]
rs11685372	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11689767	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1246096	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1246105	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12465867	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs12713783	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12995433	0.96[ASN][1000 genomes]
rs12996463	0.87[ASN][1000 genomes]
rs13007306	0.85[EUR][1000 genomes]
rs1320374	0.87[JPT][hapmap]
rs1403412	1.00[CHB][hapmap]
rs1406105	0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534471	0.80[YRI][hapmap]
rs17349804	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1852645	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1852646	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1852647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1881246	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs1881247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881248	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2017116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2037814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2091503	0.82[ASN][1000 genomes]
rs2091504	0.84[ASN][1000 genomes]
rs2178154	0.92[ASN][1000 genomes]
rs2421489	0.92[CHB][hapmap]
rs2421545	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2421546	1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs2421548	0.96[ASN][1000 genomes]
rs2421550	0.80[YRI][hapmap]
rs2421660	0.86[EUR][1000 genomes]
rs2421662	0.86[EUR][1000 genomes]
rs2461691	0.85[EUR][1000 genomes]
rs28708576	0.82[EUR][1000 genomes]
rs2948441	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs2950770	0.98[EUR][1000 genomes]
rs3820700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3980696	0.83[EUR][1000 genomes]
rs4241256	0.86[EUR][1000 genomes]
rs4436991	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4852305	1.00[CEU][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4852309	0.84[EUR][1000 genomes]
rs4852927	0.96[ASN][1000 genomes]
rs4852936	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4852937	0.93[EUR][1000 genomes]
rs4852940	0.85[EUR][1000 genomes]
rs55677218	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56054150	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56068325	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56770679	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6546826	1.00[CHB][hapmap]
rs6546827	0.92[CHB][hapmap];0.80[YRI][hapmap]
rs6546829	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6546830	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6546831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6546833	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6546834	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546842	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66931335	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6706235	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6706409	1.00[CHB][hapmap]
rs6710659	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6730785	0.93[ASN][1000 genomes]
rs6732440	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6745560	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs6746458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6746971	0.90[ASN][1000 genomes]
rs6747145	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs6748040	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs6749680	0.92[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs6759464	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67877078	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67898050	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68154245	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72811907	0.94[ASN][1000 genomes]
rs72811939	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7570014	0.91[EUR][1000 genomes]
rs7574291	1.00[CHB][hapmap]
rs7576824	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs7598901	0.92[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs7608308	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7609034	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs780388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780389	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs780390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs780391	0.81[ASN][1000 genomes]
rs780393	0.82[ASN][1000 genomes]
rs780396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs802113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73615000-73645400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:73615000-73646800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:73615200-73646400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:73622000-73648000	Weak transcription	Fetal Kidney	kidney
5	chr2:73622800-73662800	Weak transcription	Right Ventricle	heart
6	chr2:73626600-73653200	Weak transcription	Left Ventricle	heart
7	chr2:73626800-73645400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:73626800-73651600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:73626800-73651800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:73626800-73662600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:73626800-73662800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:73626800-73662800	Weak transcription	Aorta	Aorta
13	chr2:73626800-73663400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:73626800-73664000	Weak transcription	Thymus	Thymus
15	chr2:73627400-73652000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:73627400-73664400	Weak transcription	Pancreas	Pancrea
17	chr2:73628800-73663000	Weak transcription	Hela-S3	cervix
18	chr2:73630600-73651600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:73631200-73645200	Weak transcription	NHDF-Ad	bronchial
20	chr2:73631400-73652600	Weak transcription	Fetal Intestine Small	intestine
21	chr2:73631400-73659800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr2:73631800-73645400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:73632000-73646200	Weak transcription	Dnd41	blood
24	chr2:73632000-73651800	Weak transcription	HepG2	liver
25	chr2:73632400-73646400	Weak transcription	Primary B cells from cord blood	blood
26	chr2:73632400-73651800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr2:73632400-73658800	Weak transcription	Liver	Liver
28	chr2:73632600-73645400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr2:73633200-73650800	Weak transcription	Fetal Thymus	thymus
30	chr2:73633200-73662800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr2:73633600-73646600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:73633800-73651000	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:73634000-73659200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:73634000-73661400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr2:73634000-73663200	Weak transcription	Psoas Muscle	Psoas
36	chr2:73634200-73652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:73634400-73662000	Weak transcription	Lung	lung
38	chr2:73634400-73662800	Weak transcription	Esophagus	oesophagus
39	chr2:73634600-73645800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr2:73634600-73661800	Weak transcription	Brain Germinal Matrix	brain
41	chr2:73634800-73645400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr2:73634800-73652600	Weak transcription	Fetal Intestine Large	intestine
43	chr2:73634800-73659600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr2:73635000-73646200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr2:73635000-73647800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr2:73635200-73645400	Weak transcription	Brain Angular Gyrus	brain
47	chr2:73635400-73646400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr2:73635600-73646600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr2:73635600-73659600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:73636000-73647800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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