Variant report

Variant	rs6759464
Chromosome Location	chr2:73663435-73663436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73613233..73615069-chr2:73661651..73663882,2	MCF-7	breast:

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10165862	1.00[CHB][hapmap]
rs10190002	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs10192125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197233	0.84[EUR][1000 genomes]
rs10519309	0.94[ASN][1000 genomes]
rs1083920	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1083922	0.81[ASN][1000 genomes]
rs1083923	0.82[ASN][1000 genomes]
rs10865398	1.00[CHB][hapmap]
rs1091568	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11126399	1.00[CHB][hapmap]
rs11126407	0.85[EUR][1000 genomes]
rs11126408	0.84[EUR][1000 genomes]
rs11126409	0.83[EUR][1000 genomes]
rs11680056	0.84[EUR][1000 genomes]
rs11683970	0.86[EUR][1000 genomes]
rs11685372	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11689767	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12151671	0.85[EUR][1000 genomes]
rs1246096	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1246105	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12465867	1.00[CHB][hapmap]
rs12620569	0.85[EUR][1000 genomes]
rs12713783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12995433	0.92[ASN][1000 genomes]
rs12996463	0.84[ASN][1000 genomes]
rs13007306	0.84[EUR][1000 genomes]
rs13007623	0.85[EUR][1000 genomes]
rs1403412	1.00[CHB][hapmap]
rs1406105	0.82[CHB][hapmap];0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1528169	0.81[ASN][1000 genomes]
rs17349804	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1852645	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1852646	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1852647	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1879662	0.84[EUR][1000 genomes]
rs1879666	0.85[EUR][1000 genomes]
rs1881246	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1881247	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1881248	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2017116	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2037814	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2091503	0.86[ASN][1000 genomes]
rs2091504	0.87[ASN][1000 genomes]
rs2178154	0.96[ASN][1000 genomes]
rs2280506	0.84[EUR][1000 genomes]
rs2280507	0.84[EUR][1000 genomes]
rs2421489	0.84[CHB][hapmap]
rs2421545	1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs2421546	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2421548	0.92[ASN][1000 genomes]
rs2421589	0.81[EUR][1000 genomes]
rs2421590	0.85[EUR][1000 genomes]
rs2421660	0.85[EUR][1000 genomes]
rs2421662	0.85[EUR][1000 genomes]
rs2461691	0.85[EUR][1000 genomes]
rs28708576	0.82[EUR][1000 genomes]
rs2948441	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs2950770	0.95[EUR][1000 genomes]
rs34719281	0.85[EUR][1000 genomes]
rs3820700	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3980696	0.83[EUR][1000 genomes]
rs4241256	0.86[EUR][1000 genomes]
rs4436991	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4443018	0.84[EUR][1000 genomes]
rs4852305	0.82[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4852309	0.83[EUR][1000 genomes]
rs4852310	0.85[EUR][1000 genomes]
rs4852927	0.92[ASN][1000 genomes]
rs4852936	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4852937	0.91[EUR][1000 genomes]
rs4852940	0.84[EUR][1000 genomes]
rs4852948	0.84[EUR][1000 genomes]
rs4852949	0.85[EUR][1000 genomes]
rs55677218	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56054150	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56068325	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56770679	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6546826	1.00[CHB][hapmap]
rs6546827	0.84[CHB][hapmap]
rs6546829	1.00[CHB][hapmap]
rs6546830	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6546831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546832	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6546833	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546834	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546842	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6546863	0.85[EUR][1000 genomes]
rs66931335	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6706235	1.00[CHB][hapmap]
rs6706409	1.00[CHB][hapmap]
rs6710659	1.00[CHB][hapmap]
rs6729347	0.85[EUR][1000 genomes]
rs6730785	0.89[ASN][1000 genomes]
rs6732440	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6734450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6744273	0.84[EUR][1000 genomes]
rs6746458	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746971	0.93[ASN][1000 genomes]
rs6747145	1.00[CHB][hapmap]
rs6748040	1.00[CHB][hapmap]
rs6749680	0.84[CHB][hapmap];0.85[ASN][1000 genomes]
rs67877078	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67898050	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68154245	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72811907	0.90[ASN][1000 genomes]
rs72811933	0.82[ASN][1000 genomes]
rs72811939	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7570014	0.93[EUR][1000 genomes]
rs7574291	1.00[CHB][hapmap]
rs7576824	1.00[CHB][hapmap]
rs7585668	0.84[EUR][1000 genomes]
rs7598901	0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs7608308	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7609034	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs780388	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs780389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs780390	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs780391	0.84[ASN][1000 genomes]
rs780393	0.85[ASN][1000 genomes]
rs780394	0.82[ASN][1000 genomes]
rs780395	0.82[ASN][1000 genomes]
rs780396	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs802113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73626800-73664000	Weak transcription	Thymus	Thymus
2	chr2:73627400-73664400	Weak transcription	Pancreas	Pancrea
3	chr2:73637800-73663600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr2:73637800-73676200	Weak transcription	Fetal Brain Male	brain
5	chr2:73639200-73675400	Weak transcription	HMEC	breast
6	chr2:73642200-73666000	Weak transcription	NHLF	lung
7	chr2:73645400-73675200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:73645600-73675200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:73645600-73676600	Weak transcription	NH-A	brain
10	chr2:73645600-73685600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:73646000-73664000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:73646400-73675200	Weak transcription	Osteobl	bone
13	chr2:73646600-73664200	Weak transcription	Small Intestine	intestine
14	chr2:73647000-73684000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr2:73649600-73668000	Weak transcription	Gastric	stomach
16	chr2:73652000-73678400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr2:73652200-73688400	Weak transcription	Colonic Mucosa	Colon
18	chr2:73654400-73664200	Weak transcription	Left Ventricle	heart
19	chr2:73657200-73675400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr2:73658400-73676600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:73658800-73666200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr2:73659400-73675400	Weak transcription	Spleen	Spleen
23	chr2:73660200-73684400	Weak transcription	HUVEC	blood vessel
24	chr2:73660400-73664000	Weak transcription	Brain Angular Gyrus	brain
25	chr2:73661200-73664000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr2:73661400-73664400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:73661600-73664600	ZNF genes & repeats	Fetal Lung	lung
28	chr2:73661600-73665400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:73661800-73664000	ZNF genes & repeats	Dnd41	blood
30	chr2:73661800-73664400	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr2:73661800-73664600	ZNF genes & repeats	Brain Germinal Matrix	brain
32	chr2:73661800-73665000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr2:73661800-73665200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:73662000-73664200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:73662000-73664400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:73662000-73664400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr2:73662000-73664400	ZNF genes & repeats	Primary T cells from cord blood	blood
38	chr2:73662200-73665200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:73662200-73665200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:73662200-73665800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr2:73662400-73663600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
42	chr2:73662600-73663600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
43	chr2:73662600-73663800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
44	chr2:73662600-73663800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:73662600-73663800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
46	chr2:73662600-73663800	ZNF genes & repeats	Fetal Brain Female	brain
47	chr2:73662600-73664200	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr2:73662600-73664200	ZNF genes & repeats	Fetal Intestine Large	intestine
49	chr2:73662600-73664400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
50	chr2:73662600-73664600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links