Variant report

Variant	rs780388
Chromosome Location	chr2:73715473-73715474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73612210..73615081-chr2:73714696..73716979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116127	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10189578	0.87[ASN][1000 genomes]
rs10190002	0.85[ASN][1000 genomes]
rs10192125	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10197233	0.85[EUR][1000 genomes]
rs10519309	0.81[ASN][1000 genomes]
rs1083919	0.88[ASN][1000 genomes]
rs1083920	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1083921	0.85[ASN][1000 genomes]
rs1083922	0.86[ASN][1000 genomes]
rs1083923	0.87[ASN][1000 genomes]
rs10865398	0.88[ASN][1000 genomes]
rs1091568	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11126407	0.86[EUR][1000 genomes]
rs11126408	0.85[EUR][1000 genomes]
rs11126409	0.84[EUR][1000 genomes]
rs11680056	0.85[EUR][1000 genomes]
rs11683970	0.86[EUR][1000 genomes]
rs11685372	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11688718	0.83[ASN][1000 genomes]
rs11689767	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12151671	0.86[EUR][1000 genomes]
rs1246094	0.90[ASN][1000 genomes]
rs1246096	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1246105	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12620569	0.86[EUR][1000 genomes]
rs12713783	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13007306	0.85[EUR][1000 genomes]
rs13007623	0.86[EUR][1000 genomes]
rs1406105	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17349804	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1852645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1852646	0.85[EUR][1000 genomes]
rs1852647	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1879662	0.85[EUR][1000 genomes]
rs1879666	0.86[EUR][1000 genomes]
rs1881247	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1881248	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2017116	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2037814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2091503	0.80[ASN][1000 genomes]
rs2091504	0.82[ASN][1000 genomes]
rs2178154	0.83[ASN][1000 genomes]
rs2280506	0.85[EUR][1000 genomes]
rs2280507	0.85[EUR][1000 genomes]
rs2421545	0.83[ASN][1000 genomes]
rs2421585	0.86[EUR][1000 genomes]
rs2421587	0.83[EUR][1000 genomes]
rs2421589	0.81[EUR][1000 genomes]
rs2421590	0.86[EUR][1000 genomes]
rs2421660	0.86[EUR][1000 genomes]
rs2421662	0.86[EUR][1000 genomes]
rs2461691	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28708576	0.82[EUR][1000 genomes]
rs2948441	0.94[EUR][1000 genomes]
rs2950770	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34719281	0.86[EUR][1000 genomes]
rs3820700	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980696	0.83[EUR][1000 genomes]
rs4241256	0.86[EUR][1000 genomes]
rs4436991	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4443018	0.85[EUR][1000 genomes]
rs4511748	0.83[EUR][1000 genomes]
rs4852305	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4852309	0.84[EUR][1000 genomes]
rs4852310	0.86[EUR][1000 genomes]
rs4852936	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4852937	0.93[EUR][1000 genomes]
rs4852940	0.85[EUR][1000 genomes]
rs4852948	0.85[EUR][1000 genomes]
rs4852949	0.86[EUR][1000 genomes]
rs55677218	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56054150	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56068325	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56770679	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6546830	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6546831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6546832	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6546833	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6546834	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6546842	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6546863	0.86[EUR][1000 genomes]
rs6546865	0.86[EUR][1000 genomes]
rs6546870	0.86[EUR][1000 genomes]
rs66931335	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6712242	0.83[EUR][1000 genomes]
rs6725284	0.86[EUR][1000 genomes]
rs6729347	0.86[EUR][1000 genomes]
rs6729468	0.81[ASN][1000 genomes]
rs6734450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6743576	0.82[ASN][1000 genomes]
rs6744273	0.85[EUR][1000 genomes]
rs6746458	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6746971	0.81[ASN][1000 genomes]
rs6757996	0.83[ASN][1000 genomes]
rs6759464	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67877078	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67898050	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68154245	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72811933	0.91[ASN][1000 genomes]
rs72811939	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7562047	0.93[ASN][1000 genomes]
rs7566315	0.85[ASN][1000 genomes]
rs7570014	0.91[EUR][1000 genomes]
rs7579068	0.83[EUR][1000 genomes]
rs7585119	0.93[ASN][1000 genomes]
rs7585668	0.85[EUR][1000 genomes]
rs7598901	0.80[ASN][1000 genomes]
rs7606483	0.82[ASN][1000 genomes]
rs7608308	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7609034	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7609249	0.82[ASN][1000 genomes]
rs780389	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs780390	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs780391	0.90[ASN][1000 genomes]
rs780393	0.91[ASN][1000 genomes]
rs780394	0.87[ASN][1000 genomes]
rs780395	0.87[ASN][1000 genomes]
rs780396	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802113	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73676200-73719400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:73697600-73717800	Weak transcription	Fetal Heart	heart
3	chr2:73701800-73716800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:73702400-73716600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr2:73704600-73716800	Weak transcription	HSMMtube	muscle
6	chr2:73704600-73721000	Weak transcription	HMEC	breast
7	chr2:73704800-73716800	Weak transcription	Brain Angular Gyrus	brain
8	chr2:73704800-73718600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr2:73705800-73722600	Weak transcription	Brain Substantia Nigra	brain
10	chr2:73706600-73721000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:73706800-73716800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:73706800-73717000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:73707000-73716400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:73707000-73716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:73707000-73716800	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:73707000-73716800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr2:73707000-73717000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr2:73707000-73718000	Weak transcription	Fetal Kidney	kidney
19	chr2:73707000-73718000	Weak transcription	A549	lung
20	chr2:73707000-73733400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr2:73709200-73725400	Weak transcription	Fetal Brain Male	brain
22	chr2:73711800-73740400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:73712200-73716600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr2:73712600-73716800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr2:73712600-73716800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:73712800-73716200	Weak transcription	HepG2	liver
27	chr2:73712800-73716600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:73712800-73716800	Weak transcription	Left Ventricle	heart
29	chr2:73712800-73717000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr2:73713000-73721000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr2:73713000-73721000	Weak transcription	Small Intestine	intestine
32	chr2:73713200-73716800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr2:73713200-73757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr2:73713400-73721000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr2:73713600-73716800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr2:73713800-73715600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr2:73713800-73715600	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr2:73713800-73715800	ZNF genes & repeats	Thymus	Thymus
39	chr2:73713800-73716800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr2:73713800-73716800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr2:73713800-73719600	Strong transcription	Primary T cells from cord blood	blood
42	chr2:73714000-73715600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr2:73714000-73715600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr2:73714000-73715800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:73714000-73715800	ZNF genes & repeats	Lung	lung
46	chr2:73714000-73719200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr2:73714200-73715600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:73714200-73715600	ZNF genes & repeats	Esophagus	oesophagus
49	chr2:73714200-73715800	Strong transcription	Pancreas	Pancrea
50	chr2:73714200-73715800	ZNF genes & repeats	GM12878-XiMat	blood

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