Variant report

Variant	rs1246105
Chromosome Location	chr2:73694160-73694161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10165862	1.00[CHB][hapmap]
rs10189578	0.81[ASN][1000 genomes]
rs10190002	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10192125	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10193972	0.80[YRI][hapmap]
rs10197233	0.84[EUR][1000 genomes]
rs10519309	0.82[ASN][1000 genomes]
rs1052161	0.87[JPT][hapmap]
rs1083919	0.84[ASN][1000 genomes]
rs1083920	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1083921	0.83[ASN][1000 genomes]
rs1083922	0.84[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs1083923	0.92[ASN][1000 genomes]
rs10865398	1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1091568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11126399	1.00[CHB][hapmap]
rs11126407	0.85[EUR][1000 genomes]
rs11126408	0.84[EUR][1000 genomes]
rs11126409	0.83[EUR][1000 genomes]
rs11680056	0.84[EUR][1000 genomes]
rs11683970	0.86[EUR][1000 genomes]
rs11685372	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11689767	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12151671	0.85[EUR][1000 genomes]
rs1246094	0.87[ASN][1000 genomes]
rs1246096	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12465867	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs12478871	0.85[CEU][hapmap]
rs12618600	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs12620569	0.85[EUR][1000 genomes]
rs12713783	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12995433	0.81[ASN][1000 genomes]
rs13007306	0.84[EUR][1000 genomes]
rs13007623	0.85[EUR][1000 genomes]
rs13017182	0.92[CHB][hapmap]
rs1320374	0.87[JPT][hapmap]
rs1403412	1.00[CHB][hapmap]
rs1406105	0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1534471	0.80[YRI][hapmap]
rs17349804	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1852645	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1852646	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1852647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1879662	0.84[EUR][1000 genomes]
rs1879666	0.85[EUR][1000 genomes]
rs1881246	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1881247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1881248	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2017116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2037814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2091503	0.85[ASN][1000 genomes]
rs2091504	0.86[ASN][1000 genomes]
rs2178154	0.84[ASN][1000 genomes]
rs2280506	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2280507	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs2421489	0.92[CHB][hapmap]
rs2421545	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2421546	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2421548	0.81[ASN][1000 genomes]
rs2421550	0.80[YRI][hapmap]
rs2421581	0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs2421585	0.85[EUR][1000 genomes]
rs2421587	0.83[EUR][1000 genomes]
rs2421589	0.81[EUR][1000 genomes]
rs2421590	0.85[EUR][1000 genomes]
rs2421660	0.85[EUR][1000 genomes]
rs2421662	0.85[EUR][1000 genomes]
rs2421668	0.92[CHB][hapmap]
rs2421669	0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs2461691	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28708576	0.82[EUR][1000 genomes]
rs2948441	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2950770	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34719281	0.85[EUR][1000 genomes]
rs3820700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3980696	0.83[EUR][1000 genomes]
rs4241256	0.86[EUR][1000 genomes]
rs4436991	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4443018	0.84[EUR][1000 genomes]
rs4511748	0.83[EUR][1000 genomes]
rs4852305	1.00[CEU][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4852306	0.83[ASN][1000 genomes]
rs4852309	0.83[EUR][1000 genomes]
rs4852310	0.85[EUR][1000 genomes]
rs4852311	0.90[CEU][hapmap]
rs4852927	0.81[ASN][1000 genomes]
rs4852936	0.90[EUR][1000 genomes]
rs4852937	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4852940	0.84[EUR][1000 genomes]
rs4852948	0.84[EUR][1000 genomes]
rs4852949	0.85[EUR][1000 genomes]
rs4852959	0.92[CHB][hapmap]
rs55677218	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56054150	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56068325	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56770679	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6546826	1.00[CHB][hapmap]
rs6546827	0.92[CHB][hapmap];0.80[YRI][hapmap]
rs6546829	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6546830	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6546831	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6546832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6546833	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6546834	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6546842	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6546863	0.85[EUR][1000 genomes]
rs6546865	0.85[EUR][1000 genomes]
rs6546870	0.85[EUR][1000 genomes]
rs66931335	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6706235	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6706409	1.00[CHB][hapmap]
rs6710659	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6712242	0.83[EUR][1000 genomes]
rs6725284	0.85[EUR][1000 genomes]
rs6729347	0.85[EUR][1000 genomes]
rs6732440	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6734450	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6744273	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs6745560	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs6746458	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6746971	0.82[ASN][1000 genomes]
rs6747145	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs6748040	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs6749680	0.92[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs6759464	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67877078	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67898050	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68154245	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72811933	0.87[ASN][1000 genomes]
rs72811939	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7562047	0.86[ASN][1000 genomes]
rs7570014	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7574291	1.00[CHB][hapmap]
rs7576824	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs7579068	0.83[EUR][1000 genomes]
rs7585119	0.86[ASN][1000 genomes]
rs7585668	0.84[EUR][1000 genomes]
rs7598901	0.92[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs7608308	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7609034	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs780388	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs780389	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs780390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs780391	0.94[ASN][1000 genomes]
rs780393	0.95[ASN][1000 genomes]
rs780394	0.92[ASN][1000 genomes]
rs780395	0.92[ASN][1000 genomes]
rs780396	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs802113	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73676200-73719400	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:73676800-73706400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:73677000-73698000	Weak transcription	Hela-S3	cervix
4	chr2:73677000-73714200	Weak transcription	Pancreas	Pancrea
5	chr2:73678000-73706800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:73679200-73697000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:73680200-73706400	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:73680200-73714200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:73681600-73706800	Weak transcription	HSMM	muscle
10	chr2:73683000-73706400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:73687000-73706200	Weak transcription	Primary T cells from cord blood	blood
12	chr2:73687000-73706400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:73687400-73697400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:73687800-73700600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:73688000-73714200	Weak transcription	Ovary	ovary
16	chr2:73688600-73706200	Weak transcription	Fetal Lung	lung

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