Variant report

Variant	rs6746458
Chromosome Location	chr2:73665866-73665867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73663877..73666460-chr2:73672462..73674821,2	MCF-7	breast:
2	chr2:73664466..73667206-chr2:73668584..73670663,2	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10165862	1.00[CHB][hapmap]
rs10190002	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10192125	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197233	0.84[EUR][1000 genomes]
rs10519309	0.94[ASN][1000 genomes]
rs1052161	0.86[JPT][hapmap]
rs1083920	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1083922	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1083923	0.82[ASN][1000 genomes]
rs10865398	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1091568	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11126399	1.00[CHB][hapmap]
rs11126407	0.85[EUR][1000 genomes]
rs11126408	0.84[EUR][1000 genomes]
rs11126409	0.83[EUR][1000 genomes]
rs11680056	0.84[EUR][1000 genomes]
rs11683970	0.86[EUR][1000 genomes]
rs11685372	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11689767	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12151671	0.85[EUR][1000 genomes]
rs1246096	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1246105	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12465867	1.00[CHB][hapmap]
rs12620569	0.85[EUR][1000 genomes]
rs12713783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12995433	0.92[ASN][1000 genomes]
rs12996463	0.84[ASN][1000 genomes]
rs13007306	0.84[EUR][1000 genomes]
rs13007623	0.85[EUR][1000 genomes]
rs1320374	0.86[JPT][hapmap]
rs1403412	1.00[CHB][hapmap]
rs1406105	0.89[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1528169	0.81[ASN][1000 genomes]
rs17349804	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1852645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1852646	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1852647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1879662	0.84[EUR][1000 genomes]
rs1879666	0.85[EUR][1000 genomes]
rs1881246	1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs1881247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1881248	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2017116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2037814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2091503	0.86[ASN][1000 genomes]
rs2091504	0.87[ASN][1000 genomes]
rs2178154	0.96[ASN][1000 genomes]
rs2280506	0.84[EUR][1000 genomes]
rs2280507	0.84[EUR][1000 genomes]
rs2421489	1.00[CHB][hapmap]
rs2421545	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs2421546	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2421548	0.92[ASN][1000 genomes]
rs2421589	0.81[EUR][1000 genomes]
rs2421590	0.85[EUR][1000 genomes]
rs2421660	0.85[EUR][1000 genomes]
rs2421662	0.85[EUR][1000 genomes]
rs2461691	0.85[EUR][1000 genomes]
rs28708576	0.82[EUR][1000 genomes]
rs2948441	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs2950770	0.95[EUR][1000 genomes]
rs34719281	0.85[EUR][1000 genomes]
rs3820700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3980696	0.83[EUR][1000 genomes]
rs4241256	0.86[EUR][1000 genomes]
rs4436991	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4443018	0.84[EUR][1000 genomes]
rs4852305	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4852309	0.83[EUR][1000 genomes]
rs4852310	0.85[EUR][1000 genomes]
rs4852927	0.92[ASN][1000 genomes]
rs4852936	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4852937	0.91[EUR][1000 genomes]
rs4852940	0.84[EUR][1000 genomes]
rs4852948	0.84[EUR][1000 genomes]
rs4852949	0.85[EUR][1000 genomes]
rs55677218	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56054150	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56068325	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56770679	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6546826	1.00[CHB][hapmap]
rs6546827	0.90[CHB][hapmap]
rs6546829	1.00[CHB][hapmap]
rs6546830	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6546831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6546833	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546834	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546842	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6546863	0.85[EUR][1000 genomes]
rs66931335	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6706235	1.00[CHB][hapmap]
rs6706409	1.00[CHB][hapmap]
rs6710659	1.00[CHB][hapmap]
rs6729347	0.85[EUR][1000 genomes]
rs6730785	0.89[ASN][1000 genomes]
rs6732440	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6734450	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6744273	0.84[EUR][1000 genomes]
rs6745560	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6746971	0.93[ASN][1000 genomes]
rs6747145	1.00[CHB][hapmap]
rs6748040	1.00[CHB][hapmap]
rs6749680	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6759464	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67877078	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67898050	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68154245	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72811907	0.90[ASN][1000 genomes]
rs72811933	0.82[ASN][1000 genomes]
rs72811939	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7570014	0.93[EUR][1000 genomes]
rs7574291	1.00[CHB][hapmap]
rs7576824	1.00[CHB][hapmap]
rs7585668	0.84[EUR][1000 genomes]
rs7598901	0.90[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7608308	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7609034	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs780388	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs780389	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs780390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs780391	0.84[ASN][1000 genomes]
rs780393	0.85[ASN][1000 genomes]
rs780394	0.82[ASN][1000 genomes]
rs780395	0.82[ASN][1000 genomes]
rs780396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs802113	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73637800-73676200	Weak transcription	Fetal Brain Male	brain
2	chr2:73639200-73675400	Weak transcription	HMEC	breast
3	chr2:73642200-73666000	Weak transcription	NHLF	lung
4	chr2:73645400-73675200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:73645600-73675200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:73645600-73676600	Weak transcription	NH-A	brain
7	chr2:73645600-73685600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:73646400-73675200	Weak transcription	Osteobl	bone
9	chr2:73647000-73684000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:73649600-73668000	Weak transcription	Gastric	stomach
11	chr2:73652000-73678400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:73652200-73688400	Weak transcription	Colonic Mucosa	Colon
13	chr2:73657200-73675400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:73658400-73676600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:73658800-73666200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:73659400-73675400	Weak transcription	Spleen	Spleen
17	chr2:73660200-73684400	Weak transcription	HUVEC	blood vessel
18	chr2:73663000-73668000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:73663000-73674600	Weak transcription	Aorta	Aorta
20	chr2:73663000-73675200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:73663200-73675200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:73663200-73675200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:73663400-73675400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:73663400-73675400	Weak transcription	Colon Smooth Muscle	Colon
25	chr2:73663600-73666800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr2:73663600-73674600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:73663600-73680600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr2:73663800-73675200	Weak transcription	Psoas Muscle	Psoas
29	chr2:73663800-73689400	Weak transcription	NHDF-Ad	bronchial
30	chr2:73664000-73666000	Strong transcription	Dnd41	blood
31	chr2:73664000-73666800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr2:73664000-73674600	Weak transcription	Hela-S3	cervix
33	chr2:73664200-73666000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr2:73664200-73668800	Strong transcription	Fetal Stomach	stomach
35	chr2:73664200-73675200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr2:73664400-73667400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr2:73664400-73674600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr2:73664400-73676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:73664400-73678400	Weak transcription	K562	blood
40	chr2:73664400-73684200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr2:73664600-73671200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:73664600-73673800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:73664600-73674600	Weak transcription	Brain Germinal Matrix	brain
44	chr2:73664600-73674600	Weak transcription	Esophagus	oesophagus
45	chr2:73664600-73675200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr2:73664600-73675200	Weak transcription	Brain Substantia Nigra	brain
47	chr2:73664600-73675200	Weak transcription	Lung	lung
48	chr2:73664600-73675400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr2:73664600-73675400	Weak transcription	Right Ventricle	heart
50	chr2:73664600-73676000	Weak transcription	GM12878-XiMat	blood

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