Variant report
| Variant | rs1853173 |
|---|---|
| Chromosome Location | chr10:37728935-37728936 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ANKRD30A-5 | chr10:37707165-37730322 | NONHSAT012779 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11011176 | 0.81[AFR][1000 genomes] |
| rs11011180 | 0.81[AFR][1000 genomes] |
| rs12777805 | 0.83[ASN][1000 genomes] |
| rs12780267 | 0.81[AFR][1000 genomes] |
| rs1321965 | 0.96[AFR][1000 genomes] |
| rs16936499 | 0.92[AFR][1000 genomes] |
| rs1853176 | 0.81[AFR][1000 genomes] |
| rs1938418 | 0.81[AFR][1000 genomes] |
| rs34888293 | 0.81[AFR][1000 genomes] |
| rs35328530 | 0.81[AFR][1000 genomes] |
| rs35540073 | 0.81[AFR][1000 genomes] |
| rs71489150 | 0.83[ASN][1000 genomes] |
| rs71489151 | 0.81[ASN][1000 genomes] |
| rs7902123 | 0.92[AFR][1000 genomes] |
| rs7918840 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2750892 | chr10:37525594-37733381 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv975007 | chr10:37677218-37743945 | ZNF genes & repeats Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv895030 | chr10:37715737-38674609 | Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:37728600-37729200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
