Variant report

Variant	rs185330544
Chromosome Location	chr19:40615705-40615706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF780A-2	chr19:40615699-40615844	NONHSAT066350

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv2488	chr19:40593818-40631406	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv911697	chr19:40599603-40711333	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv3366785	chr19:40612462-40616760	Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2425802	chr19:40612624-40616500	Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3414696	chr19:40612678-40616057	Inactive region	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv8106	chr19:40612832-40615987	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv2312735	chr19:40612898-40615968	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv3318123	chr19:40612971-40615867	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv3520172	chr19:40612999-40615849	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv3520179	chr19:40613003-40615870	Inactive region	lncRNA	n/a	inside rSNPs	diseases
15	esv3520177	chr19:40613016-40615816	Inactive region	lncRNA	n/a	inside rSNPs	diseases
16	esv3520176	chr19:40613020-40615799	Inactive region	lncRNA	n/a	inside rSNPs	diseases
17	esv3318124	chr19:40613025-40615833	Inactive region	lncRNA	n/a	inside rSNPs	diseases
18	esv3520178	chr19:40613032-40615811	Inactive region	lncRNA	n/a	inside rSNPs	diseases
19	esv3318122	chr19:40613034-40615834	Inactive region	lncRNA	n/a	inside rSNPs	diseases
20	esv3318125	chr19:40613042-40615787	Inactive region	lncRNA	n/a	inside rSNPs	diseases
21	esv3520173	chr19:40613047-40615809	Inactive region	lncRNA	n/a	inside rSNPs	diseases
22	esv3318121	chr19:40613073-40615770	Inactive region	lncRNA	n/a	inside rSNPs	diseases
23	esv3520171	chr19:40613088-40615760	Inactive region	lncRNA	n/a	inside rSNPs	diseases
24	nsv498901	chr19:40613089-40615776	Inactive region	lncRNA	n/a	inside rSNPs	diseases
25	esv3318126	chr19:40613090-40615776	Inactive region	lncRNA	n/a	inside rSNPs	diseases
26	esv3520180	chr19:40613090-40615776	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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