Variant report

Variant	rs1853336
Chromosome Location	chr6:54464151-54464152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10447377	0.83[CHB][hapmap]
rs10484984	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11757171	0.83[CHB][hapmap]
rs12206733	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13193002	0.83[CHB][hapmap]
rs1923749	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6459021	0.83[CHB][hapmap]
rs925057	0.83[CHB][hapmap]
rs9474991	0.83[CHB][hapmap]
rs995951	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54463800-54464200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:54463800-54464200	Enhancers	Osteobl	bone
3	chr6:54464000-54467000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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