Variant report

Variant	rs1854704
Chromosome Location	chr9:72235577-72235578
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10511967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10780542	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4744574	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7020412	0.91[EUR][1000 genomes]
rs73453565	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73453567	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7849891	0.84[EUR][1000 genomes]
rs7856518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7856629	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7874873	0.91[EUR][1000 genomes]
rs959133	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
2	chr9:72221200-72237200	Weak transcription	Ovary	ovary
3	chr9:72226200-72236800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:72232200-72239800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:72233600-72237400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:72234000-72236800	Weak transcription	Brain Anterior Caudate	brain
7	chr9:72234000-72237200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:72234000-72237200	Weak transcription	Fetal Stomach	stomach
9	chr9:72234200-72237200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:72234800-72236400	Strong transcription	Liver	Liver
11	chr9:72234800-72237200	Weak transcription	Brain Substantia Nigra	brain
12	chr9:72234800-72237800	Weak transcription	Fetal Kidney	kidney
13	chr9:72235200-72236000	Strong transcription	Aorta	Aorta
14	chr9:72235400-72236600	Weak transcription	Brain Germinal Matrix	brain
15	chr9:72235400-72237200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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