Variant report

Variant	rs10780542
Chromosome Location	chr9:72242644-72242645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10511967	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10746683	1.00[MEX][hapmap]
rs17082716	1.00[MEX][hapmap]
rs17082926	1.00[MEX][hapmap]
rs17082946	1.00[MEX][hapmap]
rs17083983	1.00[GIH][hapmap]
rs1854704	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4330751	1.00[MEX][hapmap]
rs4744574	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6559662	1.00[GIH][hapmap]
rs7020412	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs73453565	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73453567	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7849891	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856518	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7856629	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7874873	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs959133	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72238000-72243000	Weak transcription	Psoas Muscle	Psoas
2	chr9:72238000-72247600	Weak transcription	Fetal Kidney	kidney
3	chr9:72238800-72243600	Weak transcription	Ovary	ovary
4	chr9:72239600-72247600	Weak transcription	Liver	Liver
5	chr9:72240400-72260200	Weak transcription	Brain Anterior Caudate	brain
6	chr9:72241200-72248600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:72242200-72260200	Weak transcription	Fetal Lung	lung
8	chr9:72242600-72243000	Enhancers	Left Ventricle	heart
9	chr9:72242600-72252600	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links