Variant report

Variant	rs6559662
Chromosome Location	chr9:72252496-72252497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10511967	1.00[GIH][hapmap]
rs10780542	1.00[GIH][hapmap]
rs17083983	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs4744926	0.91[EUR][1000 genomes]
rs7034520	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7049167	0.91[EUR][1000 genomes]
rs73453580	0.91[EUR][1000 genomes]
rs73453583	0.91[EUR][1000 genomes]
rs73455307	0.82[EUR][1000 genomes]
rs7849891	1.00[GIH][hapmap]
rs7858154	0.91[EUR][1000 genomes]
rs7874873	1.00[GIH][hapmap]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72240400-72260200	Weak transcription	Brain Anterior Caudate	brain
2	chr9:72242200-72260200	Weak transcription	Fetal Lung	lung
3	chr9:72242600-72252600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:72247400-72264200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:72248200-72253200	Weak transcription	Pancreas	Pancrea
6	chr9:72249000-72252800	Weak transcription	Fetal Kidney	kidney
7	chr9:72249200-72252800	Weak transcription	Liver	Liver
8	chr9:72250200-72261400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:72252000-72253000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:72252000-72253000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:72252000-72253200	Enhancers	HUVEC	blood vessel
12	chr9:72252000-72254000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:72252000-72254400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:72252200-72252800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:72252200-72253600	Enhancers	NHDF-Ad	bronchial
16	chr9:72252200-72254400	Enhancers	NHEK	skin
17	chr9:72252400-72252600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:72252400-72253000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:72252400-72253000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:72252400-72253000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:72252400-72253200	Enhancers	Brain Cingulate Gyrus	brain
22	chr9:72252400-72253200	Enhancers	Brain Substantia Nigra	brain
23	chr9:72252400-72253200	Enhancers	HMEC	breast
24	chr9:72252400-72253200	Enhancers	NH-A	brain
25	chr9:72252400-72253200	Enhancers	Osteobl	bone
26	chr9:72252400-72253400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:72252400-72253600	Enhancers	Brain Hippocampus Middle	brain
28	chr9:72252400-72253600	Enhancers	HSMM	muscle

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