Variant report

Variant	rs17083983
Chromosome Location	chr9:72263252-72263253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72260330..72264322-chr9:72284288..72287596,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107282	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10511967	1.00[GIH][hapmap]
rs10780542	1.00[GIH][hapmap]
rs4744926	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6559662	1.00[GIH][hapmap];0.87[EUR][1000 genomes]
rs7034520	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7049167	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73453580	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73453583	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73455307	0.86[EUR][1000 genomes]
rs7849891	1.00[GIH][hapmap]
rs7858154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7874873	1.00[GIH][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72247400-72264200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:72253000-72285000	Weak transcription	Fetal Brain Female	brain
3	chr9:72253200-72264800	Weak transcription	NH-A	brain
4	chr9:72253400-72274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:72253600-72264200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:72255400-72264400	Weak transcription	Left Ventricle	heart
7	chr9:72256400-72265200	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:72257400-72264200	Weak transcription	Fetal Stomach	stomach
9	chr9:72258200-72274000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:72258600-72263400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:72260200-72265000	Weak transcription	Fetal Kidney	kidney
12	chr9:72260600-72263600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:72260600-72286200	Weak transcription	Aorta	Aorta
14	chr9:72260800-72264000	Weak transcription	Osteobl	bone
15	chr9:72260800-72264800	Weak transcription	Liver	Liver
16	chr9:72261400-72264200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:72261800-72264200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:72262000-72263800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:72262000-72264200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr9:72262200-72264200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:72262200-72267400	Weak transcription	Brain Substantia Nigra	brain
22	chr9:72262400-72264000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:72262400-72274200	Weak transcription	Brain Angular Gyrus	brain
24	chr9:72262600-72264000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:72262600-72285400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr9:72262800-72264400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:72262800-72275600	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:72263200-72264400	Weak transcription	Ovary	ovary
29	chr9:72263200-72264600	Weak transcription	Fetal Lung	lung

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