Variant report

Variant	rs1855366
Chromosome Location	chr13:93304940-93304941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12868140	0.80[ASN][1000 genomes]
rs17267285	1.00[CEU][hapmap]
rs1931047	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1933188	0.86[CHB][hapmap]
rs2007557	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs4619264	0.81[JPT][hapmap]
rs4771861	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7334843	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7335480	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7991159	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301827	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9516103	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs9516104	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs9516113	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs9523738	0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9523739	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs9556198	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045395	chr13:93248456-93323269	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv900906	chr13:93279563-93305318	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv18734	chr13:93279898-93352628	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv983702	chr13:93291025-93353518	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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