Variant report

Variant	rs9556198
Chromosome Location	chr13:93288119-93288120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1855366	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1931047	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1931048	0.83[CHB][hapmap]
rs1933187	0.81[CHB][hapmap]
rs1933188	0.90[CHB][hapmap]
rs2007557	0.88[ASW][hapmap];0.93[LWK][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap]
rs4619264	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs4771861	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7335480	0.88[ASW][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs7991159	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9301827	0.88[ASW][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs9516103	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap]
rs9516104	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516113	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9523738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9523739	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456070	chr13:93208593-93298523	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv562730	chr13:93208593-93298523	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1124	chr13:93242968-93289282	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1045395	chr13:93248456-93323269	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900906	chr13:93279563-93305318	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv18734	chr13:93279898-93352628	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv521051	chr13:93284783-93289163	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93287800-93289000	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links