Variant report

Variant	rs1933187
Chromosome Location	chr13:93322380-93322381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12868140	0.92[ASN][1000 genomes]
rs1931047	0.81[CHB][hapmap]
rs1931048	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1933188	0.86[CHB][hapmap]
rs4619264	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9516104	0.81[CHB][hapmap]
rs9516113	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs9516114	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9523738	0.82[CHB][hapmap]
rs9523739	0.82[CHB][hapmap]
rs9523760	0.83[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9523762	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9523763	0.94[ASN][1000 genomes]
rs9556198	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045395	chr13:93248456-93323269	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv18734	chr13:93279898-93352628	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv983702	chr13:93291025-93353518	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv977293	chr13:93320277-93324021	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93321800-93322600	Enhancers	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links