Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93294782..93296339-chr13:93300831..93303827,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11842192	0.81[EUR][1000 genomes]
rs11842961	0.81[CEU][hapmap]
rs12868140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1316999	0.80[CEU][hapmap]
rs1931047	0.83[CHB][hapmap]
rs1933187	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs34469781	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs34783515	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs34864437	0.81[EUR][1000 genomes]
rs35206958	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs35871738	0.80[EUR][1000 genomes]
rs4418924	0.81[CEU][hapmap]
rs4459436	0.81[CEU][hapmap]
rs4617701	0.81[CEU][hapmap]
rs4619264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs7991159	0.83[ASN][1000 genomes]
rs9516104	0.83[CHB][hapmap]
rs9516114	0.90[ASN][1000 genomes]
rs9523738	0.83[CHB][hapmap]
rs9523739	0.83[CHB][hapmap]
rs9523762	0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs9523763	0.84[ASN][1000 genomes]
rs9556198	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs9589612	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045395	chr13:93248456-93323269	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv900906	chr13:93279563-93305318	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv18734	chr13:93279898-93352628	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv983702	chr13:93291025-93353518	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1931048	SOX21	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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