Variant report

Variant	rs34469781
Chromosome Location	chr13:93318800-93318801
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93316466..93319082-chr13:93326794..93329759,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10507991	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10507992	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10507993	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11839769	0.94[AMR][1000 genomes]
rs11842192	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12323119	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12583136	0.84[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12583839	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12583849	0.84[CEU][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12854471	0.92[AMR][1000 genomes]
rs12864590	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12866354	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12867481	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap]
rs12869086	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12875094	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12875257	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12875425	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12875722	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12876755	0.84[CEU][hapmap]
rs12877956	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1316999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17188536	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17188543	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17188557	0.84[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17188564	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17188578	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17188599	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17188606	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17267242	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17267250	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17267257	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap]
rs17267292	0.84[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17267306	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17267327	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1931048	0.81[CEU][hapmap]
rs1933183	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1933184	0.83[CEU][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1933185	0.83[CEU][hapmap];0.82[TSI][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1933186	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2152926	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33953114	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34065542	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34085735	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34378377	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34521935	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34715171	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34783515	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34864437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34956289	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34989016	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35091315	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35206958	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35391103	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35409350	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35478536	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35871738	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35888127	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4418924	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.82[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4459436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4617701	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4619264	0.81[CEU][hapmap]
rs61974463	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61974465	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61974466	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61974467	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61975922	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61975923	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61975924	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61975929	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61975930	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61975931	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61975932	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61975933	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61975934	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61975935	0.82[AMR][1000 genomes]
rs61975936	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61975937	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61975942	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61975943	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61975944	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71427588	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71427589	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71427590	0.90[AMR][1000 genomes]
rs71427591	0.88[AMR][1000 genomes]
rs9589612	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045395	chr13:93248456-93323269	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv18734	chr13:93279898-93352628	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv983702	chr13:93291025-93353518	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv974135	chr13:93316448-93318889	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93307400-93321800	Weak transcription	Right Atrium	heart

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