Variant report

Variant	rs1856274
Chromosome Location	chr6:145671457-145671458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145670732..145673173-chr6:145676414..145678954,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10457779	0.83[AMR][1000 genomes]
rs10484700	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1832374	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1856267	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1856268	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1856269	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1972366	0.81[CEU][hapmap]
rs2039696	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2039697	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2328656	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4243477	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4896793	0.81[ASN][1000 genomes]
rs4896798	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7759297	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9322022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322025	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9376930	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9376932	0.83[AMR][1000 genomes]
rs9390307	0.81[ASN][1000 genomes]
rs9390317	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390319	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403693	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403697	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9484986	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9497288	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497291	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9497296	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145669400-145671600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:145670000-145672000	Enhancers	Fetal Heart	heart
3	chr6:145670400-145672000	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:145670800-145671800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:145670800-145672800	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:145671000-145671600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:145671400-145671800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:145671400-145672600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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