Variant report

Variant	rs4896793
Chromosome Location	chr6:145687798-145687799
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145667759..145669349-chr6:145686096..145687988,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10457779	0.95[ASN][1000 genomes]
rs10484700	0.96[ASN][1000 genomes]
rs11155413	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1832374	0.86[ASN][1000 genomes]
rs1832378	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1856267	0.86[ASN][1000 genomes]
rs1856268	0.86[ASN][1000 genomes]
rs1856269	0.86[ASN][1000 genomes]
rs1856274	0.81[ASN][1000 genomes]
rs1856275	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2039696	0.86[ASN][1000 genomes]
rs2039697	0.86[ASN][1000 genomes]
rs2328656	0.84[ASN][1000 genomes]
rs36121637	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4243477	0.86[ASN][1000 genomes]
rs4487600	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896798	0.86[ASN][1000 genomes]
rs62437909	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7751694	0.83[AMR][1000 genomes]
rs7755237	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7759297	0.86[ASN][1000 genomes]
rs9322022	0.81[ASN][1000 genomes]
rs9322025	0.96[ASN][1000 genomes]
rs9373454	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9376930	0.86[ASN][1000 genomes]
rs9390307	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9390309	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390316	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390317	0.86[ASN][1000 genomes]
rs9390319	0.86[ASN][1000 genomes]
rs9403693	0.86[ASN][1000 genomes]
rs9403699	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9484986	0.84[ASN][1000 genomes]
rs9497288	0.86[ASN][1000 genomes]
rs9497291	0.83[ASN][1000 genomes]
rs9497296	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145687400-145688200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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