Variant report

Variant	rs9403699
Chromosome Location	chr6:145730685-145730686
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10457779	0.99[ASN][1000 genomes]
rs10484700	0.97[ASN][1000 genomes]
rs11155413	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11754523	0.86[EUR][1000 genomes]
rs1832374	0.84[ASN][1000 genomes]
rs1832378	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1856267	0.84[ASN][1000 genomes]
rs1856268	0.84[ASN][1000 genomes]
rs1856269	0.84[ASN][1000 genomes]
rs2039696	0.84[ASN][1000 genomes]
rs2039697	0.84[ASN][1000 genomes]
rs2328656	0.81[ASN][1000 genomes]
rs36121637	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4243477	0.85[ASN][1000 genomes]
rs4487600	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896793	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896798	0.84[ASN][1000 genomes]
rs62437909	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7755237	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759297	0.84[ASN][1000 genomes]
rs9322025	0.97[ASN][1000 genomes]
rs9373454	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9376930	0.85[ASN][1000 genomes]
rs9376932	0.83[ASN][1000 genomes]
rs9390309	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390316	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390317	0.84[ASN][1000 genomes]
rs9390319	0.85[ASN][1000 genomes]
rs9403693	0.84[ASN][1000 genomes]
rs9484986	0.81[ASN][1000 genomes]
rs9497288	0.84[ASN][1000 genomes]
rs9497291	0.80[ASN][1000 genomes]
rs9497296	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9403699	SHPRH	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145728400-145732800	Weak transcription	Stomach Mucosa	stomach

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