Variant report

Variant	rs9390309
Chromosome Location	chr6:145693684-145693685
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10457779	0.80[ASN][1000 genomes]
rs10484700	0.82[ASN][1000 genomes]
rs11155413	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1832378	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856275	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36121637	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4487600	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896793	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62437909	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751694	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7755237	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322025	0.82[ASN][1000 genomes]
rs9373454	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376932	0.96[ASN][1000 genomes]
rs9390307	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390316	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403697	0.87[ASN][1000 genomes]
rs9403699	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145689600-145694200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:145690000-145695200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:145692800-145693800	ZNF genes & repeats	GM12878-XiMat	blood
4	chr6:145692800-145694400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:145693000-145694200	Active TSS	NHDF-Ad	bronchial
6	chr6:145693000-145694400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:145693000-145694800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:145693200-145693800	Enhancers	Adipose Nuclei	Adipose
9	chr6:145693200-145694200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:145693200-145694200	Weak transcription	Left Ventricle	heart
11	chr6:145693200-145694200	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr6:145693200-145694600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:145693200-145695400	Enhancers	Stomach Mucosa	stomach
14	chr6:145693400-145693800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:145693400-145693800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:145693400-145693800	Flanking Active TSS	Fetal Heart	heart
17	chr6:145693400-145694000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:145693400-145694000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:145693400-145694200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:145693400-145694200	Active TSS	Brain Anterior Caudate	brain
21	chr6:145693400-145694200	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr6:145693400-145694200	Active TSS	NHLF	lung
23	chr6:145693400-145694200	Active TSS	Osteobl	bone
24	chr6:145693400-145694600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:145693400-145695000	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr6:145693600-145694000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:145693600-145694200	Active TSS	Brain Hippocampus Middle	brain
28	chr6:145693600-145694200	Active TSS	Right Atrium	heart
29	chr6:145693600-145694400	Active TSS	Muscle Satellite Cultured Cells	--
30	chr6:145693600-145694400	Active TSS	Liver	Liver
31	chr6:145693600-145694400	Active TSS	Duodenum Mucosa	Duodenum

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