Variant report

Variant	rs1856316
Chromosome Location	chr1:67011019-67011020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10493409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10889627	1.00[JPT][hapmap]
rs12136922	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17434186	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17486706	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17486958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17486972	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56395519	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57305523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66540185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72670235	0.84[EUR][1000 genomes]
rs7553325	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1856316	ANKRD13C	cis	parietal	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:67000800-67029800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:67001200-67022000	Weak transcription	Right Ventricle	heart
4	chr1:67003000-67012400	Enhancers	Brain Hippocampus Middle	brain
5	chr1:67004200-67012200	Enhancers	NHDF-Ad	bronchial
6	chr1:67004200-67012400	Enhancers	Fetal Heart	heart
7	chr1:67004800-67012400	Enhancers	Brain Substantia Nigra	brain
8	chr1:67005400-67012200	Enhancers	Brain Angular Gyrus	brain
9	chr1:67006400-67011200	Weak transcription	Fetal Brain Male	brain
10	chr1:67006800-67012000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:67007000-67011400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:67007000-67021800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:67007200-67018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:67007800-67012400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:67008000-67012400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:67008400-67018000	Weak transcription	Lung	lung
17	chr1:67008600-67011200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr1:67008600-67011200	Enhancers	Brain Anterior Caudate	brain
19	chr1:67008600-67012600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:67008600-67013000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:67009000-67019600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr1:67009200-67011400	Enhancers	Left Ventricle	heart
23	chr1:67009400-67011800	Weak transcription	Right Atrium	heart
24	chr1:67009400-67013800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr1:67009600-67011200	Enhancers	Brain Cingulate Gyrus	brain
26	chr1:67009600-67011400	Enhancers	HepG2	liver
27	chr1:67009600-67018200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:67009600-67019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:67009800-67028200	Weak transcription	Brain Germinal Matrix	brain
30	chr1:67010000-67013400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr1:67010000-67018600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr1:67010000-67018600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:67010000-67029000	Weak transcription	Fetal Kidney	kidney
34	chr1:67010600-67011400	Enhancers	Aorta	Aorta
35	chr1:67010800-67011200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:67010800-67011200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:67010800-67011200	Enhancers	Pancreas	Pancrea
38	chr1:67010800-67012400	Enhancers	Fetal Lung	lung
39	chr1:67010800-67018600	Weak transcription	Osteobl	bone
40	chr1:67011000-67011200	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr1:67011000-67011400	Enhancers	Stomach Smooth Muscle	stomach
42	chr1:67011000-67011600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:67011000-67013200	Enhancers	NHLF	lung
44	chr1:67011000-67028000	Weak transcription	HUVEC	blood vessel

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