The 2.0 version of rSNPBase

Variant report

Variant rs66540185
Chromosome Location chr1:67010139-67010140
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:67000400-67022000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:67000800-67029800 Weak transcription Primary hematopoietic stem cells blood
3 chr1:67001200-67022000 Weak transcription Right Ventricle heart
4 chr1:67001600-67011000 Weak transcription Stomach Smooth Muscle stomach
5 chr1:67002000-67010600 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr1:67003000-67012400 Enhancers Brain Hippocampus Middle brain
7 chr1:67004200-67012200 Enhancers NHDF-Ad bronchial
8 chr1:67004200-67012400 Enhancers Fetal Heart heart
9 chr1:67004800-67012400 Enhancers Brain Substantia Nigra brain
10 chr1:67005400-67012200 Enhancers Brain Angular Gyrus brain
11 chr1:67005800-67010600 Weak transcription Fetal Brain Female brain
12 chr1:67006000-67011000 Enhancers HUVEC blood vessel
13 chr1:67006400-67011200 Weak transcription Fetal Brain Male brain
14 chr1:67006800-67012000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:67007000-67011400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:67007000-67021800 Weak transcription H9 Cell Line embryonic stem cell
17 chr1:67007200-67010600 Weak transcription Aorta Aorta
18 chr1:67007200-67018000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr1:67007800-67012400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
20 chr1:67008000-67012400 Enhancers Breast Myoepithelial Primary Cells Breast
21 chr1:67008200-67010200 Enhancers Hela-S3 cervix
22 chr1:67008400-67010200 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr1:67008400-67010600 Enhancers NHLF lung
24 chr1:67008400-67010800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:67008400-67018000 Weak transcription Lung lung
26 chr1:67008600-67011200 Enhancers Cortex derived primary cultured neurospheres brain
27 chr1:67008600-67011200 Enhancers Brain Anterior Caudate brain
28 chr1:67008600-67012600 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr1:67008600-67013000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:67008800-67010200 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr1:67009000-67011000 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:67009000-67019600 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr1:67009200-67010200 Enhancers Osteobl bone
34 chr1:67009200-67011400 Enhancers Left Ventricle heart
35 chr1:67009400-67011800 Weak transcription Right Atrium heart
36 chr1:67009400-67013800 Enhancers Brain Inferior Temporal Lobe brain
37 chr1:67009600-67010800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr1:67009600-67010800 Weak transcription Fetal Lung lung
39 chr1:67009600-67010800 Weak transcription Pancreas Pancrea
40 chr1:67009600-67010800 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr1:67009600-67011200 Enhancers Brain Cingulate Gyrus brain
42 chr1:67009600-67011400 Enhancers HepG2 liver
43 chr1:67009600-67018200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr1:67009600-67019600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
45 chr1:67009800-67028200 Weak transcription Brain Germinal Matrix brain
46 chr1:67010000-67013400 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr1:67010000-67018600 Weak transcription Muscle Satellite Cultured Cells --
48 chr1:67010000-67018600 Weak transcription Duodenum Smooth Muscle Duodenum
49 chr1:67010000-67029000 Weak transcription Fetal Kidney kidney

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Last update: Aug 31, 2015