Variant report

Variant	rs1856760
Chromosome Location	chr6:140766866-140766867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140718875..140720983-chr6:140765864..140768587,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12530095	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13216392	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1414836	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1856754	0.83[EUR][1000 genomes]
rs1856756	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1856757	0.83[EUR][1000 genomes]
rs3850223	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6570396	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6935828	0.83[ASN][1000 genomes]
rs9285492	0.84[ASN][1000 genomes]
rs9373280	0.84[ASN][1000 genomes]
rs9373282	0.83[EUR][1000 genomes]
rs9376520	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9385911	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9389800	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9389801	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9389807	0.81[EUR][1000 genomes]
rs9389809	0.83[EUR][1000 genomes]
rs9399317	0.90[ASN][1000 genomes]
rs9403178	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs9403183	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524995	chr6:140733855-140801497	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1029179	chr6:140733884-141051309	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
9	esv3377843	chr6:140749308-140767126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140759600-140767000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:140759800-140767000	Weak transcription	HMEC	breast
3	chr6:140762600-140767200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:140762800-140767000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:140763200-140767000	Weak transcription	HSMMtube	muscle
6	chr6:140765200-140767200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:140765600-140767800	Enhancers	HUVEC	blood vessel
8	chr6:140765800-140767800	Enhancers	Fetal Heart	heart
9	chr6:140765800-140767800	Enhancers	NHDF-Ad	bronchial
10	chr6:140766000-140767600	Enhancers	Osteobl	bone
11	chr6:140766000-140767800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:140766000-140767800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:140766000-140767800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr6:140766200-140767800	Enhancers	HSMM	muscle
15	chr6:140766400-140767200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:140766400-140767200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:140766400-140767600	Enhancers	NH-A	brain
18	chr6:140766400-140768000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:140766600-140767200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:140766600-140767200	Enhancers	Adipose Nuclei	Adipose
21	chr6:140766600-140767400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:140766600-140767800	Enhancers	NHEK	skin
23	chr6:140766800-140767200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr6:140766800-140767200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:140766800-140767400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:140766800-140767600	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:140766800-140767600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr6:140766800-140767600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:140766800-140767600	Enhancers	NHLF	lung
30	chr6:140766800-140767800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:140766800-140767800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:140766800-140768000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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