The 2.0 version of rSNPBase

Variant report

Variant rs1857209
Chromosome Location chr1:147129727-147129728
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:147097600-147130000 Weak transcription Stomach Mucosa stomach
2 chr1:147113000-147136200 Weak transcription NH-A brain
3 chr1:147113000-147141400 Weak transcription Fetal Brain Male brain
4 chr1:147113200-147130800 Weak transcription NHEK skin
5 chr1:147114000-147141000 Weak transcription Osteobl bone
6 chr1:147114200-147133800 Weak transcription Pancreatic Islets Pancreatic Islet
7 chr1:147117200-147131800 Strong transcription Breast Myoepithelial Primary Cells Breast
8 chr1:147117800-147130400 Weak transcription NHLF lung
9 chr1:147118000-147133800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:147118200-147136600 Weak transcription HSMM muscle
11 chr1:147118600-147130400 Weak transcription GM12878-XiMat blood
12 chr1:147118800-147136600 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:147119000-147131800 Weak transcription Fetal Heart heart
14 chr1:147119000-147132000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:147119000-147132200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr1:147119600-147131600 Strong transcription Primary hematopoietic stem cells short term culture blood
17 chr1:147120000-147141400 Weak transcription Fetal Thymus thymus
18 chr1:147121200-147130600 Weak transcription Brain Cingulate Gyrus brain
19 chr1:147121400-147130600 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr1:147122000-147141400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr1:147122400-147132800 Weak transcription Brain Germinal Matrix brain
22 chr1:147122400-147141600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr1:147124000-147130400 Weak transcription Primary B cells from cord blood blood
24 chr1:147124200-147130200 Weak transcription HSMMtube muscle
25 chr1:147124200-147140200 Weak transcription Fetal Kidney kidney
26 chr1:147124200-147140200 Weak transcription HMEC breast
27 chr1:147124200-147141200 Weak transcription Psoas Muscle Psoas
28 chr1:147124400-147130000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:147124400-147130200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr1:147124400-147130400 Weak transcription Fetal Brain Female brain
31 chr1:147124400-147132000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:147124400-147132600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:147124400-147133800 Weak transcription Fetal Lung lung
34 chr1:147124400-147136600 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr1:147124400-147140200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
36 chr1:147124400-147141000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr1:147124400-147141200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:147124400-147141400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr1:147124600-147130400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:147124600-147130600 Weak transcription Muscle Satellite Cultured Cells --
41 chr1:147124600-147141000 Weak transcription A549 lung
42 chr1:147125600-147131600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr1:147125600-147131800 Strong transcription Liver Liver
44 chr1:147125800-147130600 Strong transcription Rectal Smooth Muscle rectum
45 chr1:147125800-147131600 Strong transcription Duodenum Smooth Muscle Duodenum
46 chr1:147126000-147131000 Strong transcription Rectal Mucosa Donor 31 rectum
47 chr1:147126000-147131800 Strong transcription Primary neutrophils fromperipheralblood blood
48 chr1:147126000-147131800 Strong transcription Stomach Smooth Muscle stomach
49 chr1:147126200-147132000 Strong transcription HepG2 liver
50 chr1:147126400-147130000 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015