Variant report

Variant	rs1857335
Chromosome Location	chr9:117551718-117551719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10117785	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55717217	0.82[ASN][1000 genomes]
rs6478106	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7041069	0.87[EUR][1000 genomes]
rs72756541	0.91[EUR][1000 genomes]
rs7856856	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117542000-117561800	Weak transcription	Pancreas	Pancrea
2	chr9:117542400-117552600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:117542400-117561200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:117542800-117560200	Weak transcription	A549	lung
5	chr9:117543200-117552400	Weak transcription	HUVEC	blood vessel
6	chr9:117545400-117561400	Weak transcription	Gastric	stomach
7	chr9:117547400-117552800	Weak transcription	Lung	lung
8	chr9:117547800-117561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:117548000-117557000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:117548000-117565400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:117548400-117561800	Weak transcription	Esophagus	oesophagus
12	chr9:117548800-117560200	Weak transcription	Fetal Stomach	stomach
13	chr9:117549400-117560800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:117549600-117552200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr9:117549600-117552800	Weak transcription	Primary B cells from cord blood	blood
16	chr9:117550400-117552200	Weak transcription	Placenta	Placenta
17	chr9:117550400-117553200	Strong transcription	Fetal Intestine Small	intestine
18	chr9:117551200-117552600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:117551200-117552800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:117551200-117555000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:117551200-117555800	Strong transcription	Fetal Intestine Large	intestine
22	chr9:117551600-117552800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:117551600-117554200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:117551600-117560400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:117551600-117560800	Weak transcription	HMEC	breast

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