Variant report

Variant	rs7856856
Chromosome Location	chr9:117540910-117540911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117540293..117542211-chr9:117545536..117547415,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10117785	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1857335	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4979462	0.91[JPT][hapmap]
rs55682128	0.81[ASN][1000 genomes]
rs55717217	0.81[ASN][1000 genomes]
rs6478106	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041069	0.88[EUR][1000 genomes]
rs72756541	0.89[EUR][1000 genomes]
rs7847158	0.82[CEU][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117538800-117541200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:117539200-117548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:117539600-117542400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:117539800-117541800	Bivalent Enhancer	NHDF-Ad	bronchial
5	chr9:117539800-117542000	Enhancers	HSMMtube	muscle
6	chr9:117539800-117543000	Enhancers	Fetal Intestine Small	intestine
7	chr9:117539800-117543200	Enhancers	Fetal Intestine Large	intestine
8	chr9:117540000-117541000	Weak transcription	HSMM	muscle
9	chr9:117540000-117542400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr9:117540000-117543200	Enhancers	HUVEC	blood vessel
11	chr9:117540200-117541000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:117540200-117541400	Enhancers	Colonic Mucosa	Colon
13	chr9:117540200-117542000	Enhancers	A549	lung
14	chr9:117540200-117542400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:117540200-117542800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr9:117540200-117543200	Enhancers	Hela-S3	cervix
17	chr9:117540400-117541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:117540400-117541600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:117540400-117542400	Enhancers	Osteobl	bone
20	chr9:117540600-117541600	Weak transcription	Spleen	Spleen
21	chr9:117540800-117542000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:117540800-117543600	Enhancers	Stomach Mucosa	stomach

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