Variant report

Variant	rs1857651
Chromosome Location	chr9:21060974-21060975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr9:21060919-21061737	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
IFNNP1	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10114868	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10120189	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10120242	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10122238	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1051922	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10811460	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10811471	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10964823	0.82[ASN][1000 genomes]
rs12156607	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1539742	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539746	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2383179	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7038636	0.83[EUR][1000 genomes]
rs7041422	0.83[EUR][1000 genomes]
rs967102	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv1017312	chr9:20892952-21122462	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv466293	chr9:21029330-21199680	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv613752	chr9:21029330-21199680	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv466294	chr9:21037771-21082814	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv613753	chr9:21037771-21082814	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1032466	chr9:21052069-21243756	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv540084	chr9:21052069-21243756	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv892732	chr9:21054806-21089434	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21059200-21062600	Enhancers	Dnd41	blood
2	chr9:21059600-21061200	Enhancers	Primary T cells from cord blood	blood
3	chr9:21059600-21061800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr9:21060000-21061800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:21060400-21061200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:21060400-21061800	Enhancers	Primary hematopoietic stem cells	blood
7	chr9:21060400-21061800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:21060400-21062400	Enhancers	NHDF-Ad	bronchial
9	chr9:21060600-21061400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:21060600-21061400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr9:21060600-21061400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr9:21060600-21061400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr9:21060600-21061400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr9:21060600-21061400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:21060600-21061400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:21060600-21061400	Enhancers	Fetal Thymus	thymus
17	chr9:21060600-21061600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr9:21060600-21061600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr9:21060600-21061600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr9:21060600-21063000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:21060800-21061400	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr9:21060800-21061600	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr9:21060800-21061600	Enhancers	GM12878-XiMat	blood

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