Variant report

Variant	rs185902
Chromosome Location	chr1:165470814-165470815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10737514	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10800105	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10800108	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12043239	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1425754	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs1572542	0.87[MEX][hapmap]
rs2433137	0.80[ASW][hapmap];0.96[CEU][hapmap];0.98[GIH][hapmap];0.84[JPT][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7554904	1.00[CEU][hapmap];0.81[CHD][hapmap];0.92[MEX][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs185902	ILDR2	cis	parietal	SCAN
rs185902	MGST3	cis	multi-tissue	Pritchard
rs185902	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165466800-165479600	Weak transcription	Fetal Heart	heart
2	chr1:165467600-165483200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165470600-165471000	Enhancers	Left Ventricle	heart
4	chr1:165470600-165471000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr1:165470600-165471000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr1:165470600-165471400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:165470800-165471000	Enhancers	Right Atrium	heart
8	chr1:165470800-165471200	Weak transcription	Psoas Muscle	Psoas
9	chr1:165470800-165471600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:165470800-165471600	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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