Variant report

Variant	rs2433137
Chromosome Location	chr1:165466540-165466541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10737514	0.96[CEU][hapmap]
rs10800105	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12043239	0.84[EUR][1000 genomes]
rs1425754	0.96[CEU][hapmap]
rs1572542	0.83[MEX][hapmap]
rs185902	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7554904	0.96[CEU][hapmap];0.87[MEX][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2433137	MGST3	Cis_1M	lymphoblastoid	RTeQTL
rs2433137	ILDR2	cis	parietal	SCAN
rs2433137	MGST3	cis	multi-tissue	Pritchard

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165464000-165466800	Enhancers	Fetal Heart	heart
2	chr1:165464600-165467400	Enhancers	Fetal Muscle Leg	muscle
3	chr1:165464800-165466800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:165464800-165470200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:165464800-165470600	Weak transcription	Psoas Muscle	Psoas
6	chr1:165465600-165466600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:165465600-165466800	Enhancers	HepG2	liver
8	chr1:165466000-165466800	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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