Variant report

Variant	rs1859264
Chromosome Location	chr7:51053277-51053278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1016431	0.86[AMR][1000 genomes]
rs1016432	0.86[AMR][1000 genomes]
rs1018941	0.90[AMR][1000 genomes]
rs1018942	0.90[AMR][1000 genomes]
rs1018979	0.90[AMR][1000 genomes]
rs1018980	0.90[AMR][1000 genomes]
rs1024472	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10262964	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1074570	0.86[AMR][1000 genomes]
rs1074571	0.86[AMR][1000 genomes]
rs11765215	0.90[AMR][1000 genomes]
rs12534954	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13310888	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1859265	0.91[AMR][1000 genomes]
rs1859477	0.90[AMR][1000 genomes]
rs1989265	0.90[AMR][1000 genomes]
rs2023879	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2189428	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2189429	0.91[AMR][1000 genomes]
rs2189822	0.86[AMR][1000 genomes]
rs2214494	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2214495	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2214497	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2329566	0.86[AMR][1000 genomes]
rs2329568	0.86[AMR][1000 genomes]
rs2329569	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2876901	0.86[AMR][1000 genomes]
rs4947530	0.90[AMR][1000 genomes]
rs4948086	0.90[AMR][1000 genomes]
rs4948088	0.90[AMR][1000 genomes]
rs4948146	0.91[AMR][1000 genomes]
rs6943902	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6961183	1.00[CEU][hapmap]
rs6971609	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6979183	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs720068	0.90[AMR][1000 genomes]
rs7776597	0.86[AMR][1000 genomes]
rs7780389	0.86[AMR][1000 genomes]
rs7790800	0.86[AMR][1000 genomes]
rs7800611	0.86[AMR][1000 genomes]
rs7803628	0.90[AMR][1000 genomes]
rs886437	0.91[AMR][1000 genomes]
rs917072	0.86[AMR][1000 genomes]
rs917073	0.90[AMR][1000 genomes]
rs976088	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2761146	chr7:50975457-51957019	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1027122	chr7:50984824-51376078	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv538836	chr7:50984824-51376078	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv830999	chr7:51020735-51164809	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:51050600-51056400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:51052000-51055400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:51052000-51056000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:51052200-51055600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:51052200-51056000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:51052200-51056000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:51052200-51056000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:51052400-51053600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:51052400-51055400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:51052400-51056000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:51052400-51056000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:51052600-51055400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:51052800-51053800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:51052800-51055400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links