Variant report

Variant	rs7776597
Chromosome Location	chr7:51015582-51015583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1016431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1016432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1018941	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1018942	0.95[AMR][1000 genomes]
rs1018979	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1018980	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10224149	0.92[AFR][1000 genomes]
rs10236228	0.96[AFR][1000 genomes]
rs1024472	0.86[AMR][1000 genomes]
rs10262964	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs1074570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1074571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11765215	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12534954	0.86[AMR][1000 genomes]
rs13310888	0.86[AMR][1000 genomes]
rs1859264	0.86[AMR][1000 genomes]
rs1859477	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1989265	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2189822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2214494	0.86[AMR][1000 genomes]
rs2214495	0.81[AMR][1000 genomes]
rs2329566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2329568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2329569	0.86[AMR][1000 genomes]
rs2876901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4947530	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4948086	0.95[AMR][1000 genomes]
rs4948088	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6943902	0.86[AMR][1000 genomes]
rs6961183	1.00[CEU][hapmap]
rs6962777	0.96[AFR][1000 genomes]
rs6971609	0.82[AMR][1000 genomes]
rs6979183	0.86[AMR][1000 genomes]
rs720068	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7780389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7785754	0.96[AFR][1000 genomes]
rs7790800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7800611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7803628	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs917072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs917073	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs976088	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv606907	chr7:50899168-51195380	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv888022	chr7:50933678-51046674	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv508453	chr7:50963780-51030439	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2761146	chr7:50975457-51957019	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1027122	chr7:50984824-51376078	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv538836	chr7:50984824-51376078	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7776597	CXCL10	trans	brain	seeQTL
rs7776597	CXCL11	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:51006000-51021200	Weak transcription	Right Atrium	heart
2	chr7:51013400-51019600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:51014400-51016000	Enhancers	Thymus	Thymus

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