Variant report

Variant	rs1859302
Chromosome Location	chr14:69006185-69006186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69003922..69007873-chr14:69256897..69260047,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10134446	0.94[JPT][hapmap]
rs1023529	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11158749	0.88[JPT][hapmap]
rs1476586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2040782	0.85[AMR][1000 genomes]
rs2079211	0.93[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2107341	0.88[CEU][hapmap];0.90[AMR][1000 genomes]
rs2158358	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2189517	0.88[JPT][hapmap]
rs2244814	0.90[CHB][hapmap]
rs2247048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2525521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2525522	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2525523	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525524	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2525527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842325	0.93[CHB][hapmap];0.85[AMR][1000 genomes]
rs2842329	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2842331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842338	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7140266	0.94[JPT][hapmap]
rs757370	0.92[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs916962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs929285	0.93[CHB][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9323513	0.88[JPT][hapmap]
rs9323514	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68996200-69007800	Weak transcription	Stomach Mucosa	stomach
2	chr14:69002400-69016600	Weak transcription	Gastric	stomach
3	chr14:69002600-69006600	Weak transcription	Ovary	ovary
4	chr14:69002800-69006200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:69003000-69006200	Weak transcription	HSMMtube	muscle
6	chr14:69003000-69006400	Weak transcription	HSMM	muscle
7	chr14:69003000-69007800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr14:69003000-69007800	Weak transcription	Hela-S3	cervix
9	chr14:69003000-69008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:69003000-69009000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:69003200-69009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:69003600-69007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:69003600-69008000	Weak transcription	HMEC	breast
14	chr14:69003600-69009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:69003600-69009000	Weak transcription	NHEK	skin
16	chr14:69004400-69008600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:69004600-69006800	Enhancers	Rectal Smooth Muscle	rectum
18	chr14:69004600-69008400	Enhancers	Brain Germinal Matrix	brain
19	chr14:69004600-69009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:69004600-69010600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:69004800-69006800	Enhancers	Fetal Muscle Trunk	muscle
22	chr14:69004800-69006800	Enhancers	Spleen	Spleen
23	chr14:69004800-69007000	Enhancers	Left Ventricle	heart
24	chr14:69004800-69007000	Enhancers	Stomach Smooth Muscle	stomach
25	chr14:69004800-69007400	Enhancers	Psoas Muscle	Psoas
26	chr14:69004800-69008200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:69004800-69008600	Enhancers	Fetal Muscle Leg	muscle
28	chr14:69005000-69007800	Enhancers	Brain Anterior Caudate	brain
29	chr14:69005000-69008400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr14:69005000-69008800	Enhancers	Colon Smooth Muscle	Colon
31	chr14:69005000-69008800	Enhancers	Fetal Stomach	stomach
32	chr14:69005000-69010400	Weak transcription	Pancreas	Pancrea
33	chr14:69005000-69013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:69005000-69015000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:69005200-69006600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:69005400-69006200	Enhancers	Lung	lung
37	chr14:69005400-69006400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:69005400-69006400	Enhancers	Fetal Intestine Large	intestine
39	chr14:69005400-69006400	Enhancers	Fetal Intestine Small	intestine
40	chr14:69005400-69006600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr14:69005400-69006600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr14:69005400-69006600	Enhancers	HepG2	liver
43	chr14:69005400-69006800	Enhancers	Brain Substantia Nigra	brain
44	chr14:69005400-69006800	Enhancers	Fetal Lung	lung
45	chr14:69005400-69007200	Enhancers	Right Ventricle	heart
46	chr14:69005400-69008400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr14:69005600-69006600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr14:69005600-69006800	Enhancers	Brain Cingulate Gyrus	brain
49	chr14:69005600-69006800	Enhancers	Brain Hippocampus Middle	brain
50	chr14:69005600-69006800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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